[med-svn] [Git][med-team/vcfanno][master] 9 commits: New upstream version 0.3.2+ds

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / vcfanno


Commits:
10302f9a by Nilesh Patra at 2020-07-17T19:24:15+00:00
New upstream version 0.3.2+ds
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45cc854d by Nilesh Patra at 2020-07-17T19:24:16+00:00
Update upstream source from tag 'upstream/0.3.2+ds'

Update to upstream version '0.3.2+ds'
with Debian dir 8071e8c8a2c504ec26c706efc6364ada15224f0a
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e678a551 by Nilesh Patra at 2020-07-17T19:24:41+00:00
Repack to remove generated files

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fafa59bd by Nilesh Patra at 2020-07-18T01:19:16+05:30
Fix patch name and description

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7d5bcfcd by Nilesh Patra at 2020-07-18T02:41:12+05:30
Update Build-Deps, add extra binary "vcfanno-examples" for example+test data

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6570cf77 by Nilesh Patra at 2020-07-18T02:42:12+05:30
Add missing source: ex.sam for ex.bam

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f4998fd8 by Nilesh Patra at 2020-07-18T02:42:42+05:30
Add install files for both binaries

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3512fbad by Nilesh Patra at 2020-07-18T02:43:21+05:30
Regenerate removed files while repacking

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199741cc by Nilesh Patra at 2020-07-18T02:43:52+05:30
Use repacked source version

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30 changed files:

- debian/changelog
- debian/control
- debian/copyright
- + debian/missing-sources/ex.sam
- debian/patches/series
- debian/patches/shared/shared.go → debian/patches/use-archive-xopen.patch
- debian/rules
- + debian/vcfanno-examples.docs
- + debian/vcfanno.install
- debian/watch
- − docs/examples/gff_sv/genes.gff3.gz.tbi
- − example/ex.bam
- − example/ex.bam.bai
- − example/exac.vcf.gz.tbi
- − example/fitcons.bed.gz.tbi
- − tests/astar/astar.anno.vcf.gz.tbi
- − tests/by_alt_float/annotation.tsv.gz.tbi
- − tests/citest/at/testexon.bed.gz.tbi
- − tests/citest/dummyexons.bed.gz.tbi
- − tests/data/multiple-alts.vcf.gz.tbi
- − tests/data/number.vcf.gz.tbi
- − tests/dbnsfp/dbNSFP_ex.txt.gz.tbi
- − tests/dbnsfp/dbNSFP_example.txt.gz.tbi
- − tests/id-test/cosmic.small.vcf.gz.tbi
- − tests/id-test/dbsnp.small.vcf.gz.tbi
- − tests/id-test/small.vcf.gz.tbi
- − tests/multiple-alts/ma-db.vcf.gz.tbi
- − tests/notbgz/gno.vcf.gz.tbi
- − tests/overwrite-multiple-alts/a/whole.vcf.gz.tbi
- − tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz.tbi


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/vcfanno/-/compare/be7ff9bd75a34d0fb579271e74d495352c432eae...199741cc61fada0e121c6cb8b921f3b3529a27f0

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View it on GitLab: https://salsa.debian.org/med-team/vcfanno/-/compare/be7ff9bd75a34d0fb579271e74d495352c432eae...199741cc61fada0e121c6cb8b921f3b3529a27f0
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