Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
254f0d17 by Andreas Tille at 2020-07-21T13:44:10+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,16 +1,16 @@
-Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
+Last-Update: Tue, 21 Jul 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 171 | {covid-19,imaging} |
- orthanc | 89 | {covid-19,imaging,practice} |
- orthanc-wsi | 42 | {his,practice,covid-19,laboratory,imaging,oncology} |
- gdcm | 41 | {imaging-dev} |
+ dcmtk | 171 | {imaging,covid-19} |
+ orthanc | 90 | {practice,covid-19,imaging} |
+ orthanc-wsi | 43 | {his,laboratory,covid-19,imaging,practice,oncology} |
+ gdcm | 40 | {imaging-dev} |
htsjdk | 30 | {bio-dev} |
dicom3tools | 23 | {imaging} |
dcm2niix | 22 | {imaging} |
- dicomscope | 19 | {imaging} |
- gnumed-server | 18 | {practice,covid-19} |
+ dicomscope | 21 | {imaging} |
+ gnumed-server | 18 | {covid-19,practice} |
gdcm | 15 | {covid-19,imaging} |
ngs-sdk | 15 | {bio-dev} |
gdcm | 13 | {imaging-dev} |
@@ -21,30 +21,30 @@ Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
pixelmed | 10 | {imaging} |
adun.app | 9 | {bio} |
lagan | 9 | {bio} |
- melting | 9 | {bio,cloud} |
minc-tools | 9 | {imaging} |
psychopy | 9 | {psychology} |
vtk-dicom | 9 | {imaging} |
+ melting | 8 | {cloud,bio} |
orthanc-webviewer | 8 | {imaging} |
dicompyler | 7 | {oncology} |
- king | 7 | {imaging,typesetting} |
+ king | 7 | {typesetting,imaging} |
libdivsufsort | 7 | {bio-dev} |
openslide | 7 | {imaging} |
- orthanc-dicomweb | 7 | {imaging,covid-19} |
+ orthanc-dicomweb | 7 | {covid-19,imaging} |
plastimatch | 7 | {imaging} |
- treeview | 7 | {bio-phylogeny,bio} |
+ treeview | 7 | {bio,bio-phylogeny} |
bart-view | 6 | {imaging} |
biojava-live | 6 | {bio-dev} |
biomaj3-cli | 6 | {cloud} |
biosig4c++ | 6 | {physics,imaging} |
- ea-utils | 6 | {bio} |
libminc | 6 | {imaging-dev} |
obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
- paraclu | 6 | {cloud,bio} |
+ paraclu | 6 | {bio,cloud} |
biomaj3-daemon | 5 | {bio} |
+ ea-utils | 5 | {bio} |
elastix | 5 | {imaging} |
- fastlink | 5 | {cloud,bio} |
+ fastlink | 5 | {bio,cloud} |
getdata | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
mlv-smile | 5 | {bio,cloud} |
@@ -54,9 +54,9 @@ Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
rdp-alignment | 5 | {bio} |
rdp-readseq | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
- sigma-align | 5 | {bio-phylogeny,cloud,bio} |
+ sigma-align | 5 | {bio,cloud,bio-phylogeny} |
zalign | 5 | {cloud,bio} |
- anfo | 4 | {bio,cloud} |
+ anfo | 4 | {cloud,bio} |
gatb-core | 4 | {bio} |
king-probe | 4 | {bio} |
mauve-aligner | 4 | {bio} |
@@ -74,13 +74,13 @@ Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
alter-sequence-alignment | 3 | {bio} |
bandage | 3 | {bio} |
brig | 3 | {bio} |
- busco | 3 | {covid-19,bio} |
- daligner | 3 | {bio-ngs,bio} |
+ busco | 3 | {bio,covid-19} |
+ daligner | 3 | {bio,bio-ngs} |
ecopcr | 3 | {bio} |
edtsurf | 3 | {bio} |
embassy-domainatrix | 3 | {cloud,bio} |
embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {bio,cloud} |
+ embassy-domsearch | 3 | {cloud,bio} |
ipig | 3 | {bio} |
libncl | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
@@ -88,39 +88,39 @@ Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
microbegps | 3 | {bio} |
multiqc | 3 | {bio,covid-19} |
openslide | 3 | {imaging-dev} |
- oscar | 3 | {practice,tools,data} |
+ oscar | 3 | {data,practice,tools} |
perm | 3 | {cloud,bio} |
predictprotein | 3 | {bio} |
- proalign | 3 | {bio-phylogeny,bio} |
- probabel | 3 | {cloud,bio} |
+ proalign | 3 | {bio,bio-phylogeny} |
+ probabel | 3 | {bio,cloud} |
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
- salmon | 3 | {bio,covid-19} |
- seqmagick | 3 | {covid-19,bio} |
+ salmon | 3 | {covid-19,bio} |
+ seqmagick | 3 | {bio,covid-19} |
squizz | 3 | {bio,cloud} |
staden | 3 | {bio} |
- tnseq-transit | 3 | {covid-19,bio} |
+ tnseq-transit | 3 | {bio,covid-19} |
tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
- ampliconnoise | 2 | {cloud,bio} |
- arden | 2 | {bio,cloud} |
+ ampliconnoise | 2 | {bio,cloud} |
+ arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
baitfisher | 2 | {bio} |
beast2-mcmc | 2 | {bio} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
+ beast-mcmc | 2 | {bio,bio-phylogeny} |
bio-rainbow | 2 | {bio} |
- bio-tradis | 2 | {bio-dev,bio} |
+ bio-tradis | 2 | {bio,bio-dev} |
bitseq | 2 | {bio} |
- blasr | 2 | {bio,bio-ngs} |
+ blasr | 2 | {bio-ngs,bio} |
canu | 2 | {bio} |
- centrifuge | 2 | {bio,covid-19} |
+ centrifuge | 2 | {covid-19,bio} |
clonalframeml | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
dascrubber | 2 | {bio} |
dazzdb | 2 | {bio} |
- delly | 2 | {bio,covid-19} |
+ delly | 2 | {covid-19,bio} |
dindel | 2 | {bio} |
estscan | 2 | {bio} |
fastml | 2 | {bio} |
@@ -142,8 +142,8 @@ Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
phast | 2 | {bio} |
phybin | 2 | {bio} |
placnet | 2 | {bio} |
- prime-phylo | 2 | {bio,cloud} |
- prottest | 2 | {bio-phylogeny,bio} |
+ prime-phylo | 2 | {cloud,bio} |
+ prottest | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
pscan-tfbs | 2 | {bio} |
qcumber | 2 | {bio} |
@@ -170,9 +170,9 @@ Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
acedb | 1 | {cloud,bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
- cat-bat | 1 | {bio,covid-19} |
+ cat-bat | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
- embassy-phylip | 1 | {bio,cloud} |
+ embassy-phylip | 1 | {cloud,bio} |
libdisorder | 1 | {bio-dev} |
libhmsbeagle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
@@ -185,19 +185,21 @@ Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
rambo-k | 1 | {bio} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
+ sight | 1 | {imaging} |
stringtie | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
velvetoptimiser | 1 | {bio} |
volpack | 1 | {imaging-dev} |
atropos | 0 | {bio} |
- augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
- bbmap | 0 | {covid-19} |
+ bamkit | 0 | {covid-19,bio} |
+ bbmap | 0 | {covid-19,bio} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
- cufflinks | 0 | {cloud,bio} |
+ conda-package-handling | 0 | {bio-dev,bio} |
+ cufflinks | 0 | {bio,cloud} |
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -219,7 +221,7 @@ Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
libchado-perl | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
@@ -231,7 +233,7 @@ Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
- lighter | 0 | {bio,covid-19} |
+ lighter | 0 | {covid-19,bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
@@ -246,29 +248,33 @@ Last-Update: Tue, 21 Jul 2020 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
- quicktree | 0 | {bio,covid-19,bio-phylogeny} |
- relion | 0 | {bio-dev} |
+ quicktree | 0 | {covid-19,bio-phylogeny,bio} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
simpleitk | 0 | {imaging-dev} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
- spaln | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {bio,covid-19} |
+ spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
- thesias | 0 | {bio,covid-19} |
+ thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
- vienna-rna | 0 | {bio,covid-19} |
+ varscan | 0 | {bio,covid-19} |
+ vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio,covid-19} |
- pplacer | -1 | {bio-phylogeny,covid-19,bio} |
- pycoqc | -1 | {covid-19,bio} |
+ dextractor | -1 | {bio,covid-19} |
+ intake | -1 | {bio-dev,bio} |
+ orthanc-python | -1 | {covid-19} |
+ pplacer | -1 | {covid-19,bio,bio-phylogeny} |
+ pycoqc | -1 | {bio,covid-19} |
shovill | -1 | {bio,covid-19} |
+ sight | -1 | {imaging-dev} |
yanagiba | -1 | {bio,covid-19} |
-(297 rows)
+(303 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/254f0d17977f242024bb2eb2b977475950997d30
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/254f0d17977f242024bb2eb2b977475950997d30
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