[med-svn] [Git][med-team/mothur][master] 7 commits: New upstream version 1.44.2

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / mothur


Commits:
3fb84752 by Andreas Tille at 2020-07-21T15:26:47+02:00
New upstream version 1.44.2
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4715bcc7 by Andreas Tille at 2020-07-21T15:26:47+02:00
routine-update: New upstream version

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b447f4de by Andreas Tille at 2020-07-21T15:26:58+02:00
Update upstream source from tag 'upstream/1.44.2'

Update to upstream version '1.44.2'
with Debian dir e8b2e5251c12dc1edf577a9d5f426be91aaf5d34
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335bd809 by Andreas Tille at 2020-07-22T10:09:32+02:00
Update patches

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15551849 by Andreas Tille at 2020-07-22T10:41:45+02:00
Fix make call

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a82ee389 by Andreas Tille at 2020-07-22T11:35:00+02:00
Do not build uchime explicitly in d/rules

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a929146d by Andreas Tille at 2020-07-22T11:59:34+02:00
Upload to unstable

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30 changed files:

- Makefile
- Mothur.xcodeproj/project.pbxproj
- debian/changelog
- − debian/patches/0001-Add-hardening-flags.patch
- debian/patches/0002-Fix-include.patch
- + debian/patches/fix_makefile.patch
- debian/patches/series
- debian/rules
- + source/calculators/calculator.cpp
- source/calculators/calculator.h
- + source/calculators/eachgapdist.cpp
- source/calculators/eachgapdist.h
- + source/calculators/eachgapignore.cpp
- source/calculators/eachgapignore.h
- + source/calculators/ignoregaps.cpp
- source/calculators/ignoregaps.h
- source/calculators/onegapdist.cpp
- source/calculators/onegapdist.h
- + source/calculators/onegapignore.cpp
- source/calculators/onegapignore.h
- source/chimera/bellerophon.cpp
- source/chimera/ccode.cpp
- source/chimera/chimeraslayer.cpp
- source/chimera/decalc.cpp
- source/chimera/pintail.cpp
- source/classifier/bayesian.cpp
- source/classifier/classify.cpp
- source/classifier/opticlassifier.cpp
- source/classifier/opticlassifier.hpp
- source/commandfactory.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/mothur/-/compare/54c077bdb5909ff33920df24a3aa307c8663fd44...a929146d7d4150c70ef25f65c9535376b303668c

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View it on GitLab: https://salsa.debian.org/med-team/mothur/-/compare/54c077bdb5909ff33920df24a3aa307c8663fd44...a929146d7d4150c70ef25f65c9535376b303668c
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