[med-svn] [Git][med-team/dialign-t][master] 11 commits: Added patch to fix FTBFS with Gcc 10
Étienne Mollier
gitlab at salsa.debian.org
Wed Jul 22 23:36:07 BST 2020
Étienne Mollier pushed to branch master at Debian Med / dialign-t
Commits:
1f07fba9 by Étienne Mollier at 2020-07-22T23:56:38+02:00
Added patch to fix FTBFS with Gcc 10
- - - - -
d356dec9 by Étienne Mollier at 2020-07-23T00:05:43+02:00
Moved watch link to https://
Note however that the link to download the newer source code version
is still fetched through http://. This is due to hardcoded http:// in
download links.
- - - - -
e9ab7f06 by Étienne Mollier at 2020-07-23T00:07:16+02:00
Fixed spelling error reported by lintian
- - - - -
569b6538 by Étienne Mollier at 2020-07-23T00:09:21+02:00
Added DEP3 header to gcc10.patch
- - - - -
01bc98fd by Étienne Mollier at 2020-07-23T00:11:01+02:00
routine-update: Standards-Version: 4.5.0
- - - - -
0e35142a by Étienne Mollier at 2020-07-23T00:11:01+02:00
routine-update: debhelper-compat 13
- - - - -
f4924f57 by Étienne Mollier at 2020-07-23T00:11:03+02:00
routine-update: Add salsa-ci file
- - - - -
dac90afe by Étienne Mollier at 2020-07-23T00:11:03+02:00
routine-update: Rules-Requires-Root: no
- - - - -
e01eb95a by Étienne Mollier at 2020-07-23T00:11:04+02:00
Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
- - - - -
bc1dad5a by Étienne Mollier at 2020-07-23T00:11:05+02:00
Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright).
Changes-By: lintian-brush
- - - - -
725e0682 by Étienne Mollier at 2020-07-23T00:11:37+02:00
routine-update: Ready to upload to unstable
- - - - -
10 changed files:
- debian/README.Debian
- debian/changelog
- − debian/compat
- debian/control
- + debian/patches/gcc10.patch
- debian/patches/series
- + debian/salsa-ci.yml
- debian/upstream/metadata
- debian/watch
- − source/Makefile.orig
Changes:
=====================================
debian/README.Debian
=====================================
@@ -7,7 +7,7 @@ The configuration directory shipped with the source is installed in
Possible issues with this package:
- - Users have no write acces to /usr/share/dialign-tx, so problems are expected
- when running dialign-t -C.
+ - Users have no write access to /usr/share/dialign-tx, so problems are
+ expected when running dialign-t -C.
-- Charles Plessy <plessy at debian.org> Fri, 04 Apr 2008 11:23:25 +0900
=====================================
debian/changelog
=====================================
@@ -1,3 +1,19 @@
+dialign-t (1.0.2-13) unstable; urgency=medium
+
+ * Team upload.
+ * Added patch to fix FTBFS with Gcc 10. (Closes: #957131)
+ * Moved watch link to https://.
+ * Fixed spelling error reported by lintian in README.Debian.
+ * Standards-Version: 4.5.0 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Use secure URI in Homepage field.
+ * Remove obsolete field Contact from debian/upstream/metadata (already present
+ in machine-readable debian/copyright).
+
+ -- Étienne Mollier <etienne.mollier at mailoo.org> Thu, 23 Jul 2020 00:11:05 +0200
+
dialign-t (1.0.2-12) unstable; urgency=medium
[ Jelmer Vernooij ]
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -4,11 +4,12 @@ Uploaders: Charles Plessy <plessy at debian.org>,
Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~)
-Standards-Version: 4.2.1
+Build-Depends: debhelper-compat (= 13)
+Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/dialign-t
Vcs-Git: https://salsa.debian.org/med-team/dialign-t.git
-Homepage: http://dialign-tx.gobics.de/
+Homepage: https://dialign-tx.gobics.de/
+Rules-Requires-Root: no
Package: dialign-tx
Architecture: any
=====================================
debian/patches/gcc10.patch
=====================================
@@ -0,0 +1,18 @@
+Description: fix FTBFS with Gcc 10
+Author: Étienne Mollier <etienne.mollier at mailoo.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957131
+Forwarded: no
+Last-Update: 2020-07-23
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- dialign-t.orig/source/parameters.h
++++ dialign-t/source/parameters.h
+@@ -138,7 +138,7 @@
+ /* global variable */
+ /* */
+ /************************************************/
+-struct parameters* para;
++__attribute__((__common__)) struct parameters* para;
+
+
+
=====================================
debian/patches/series
=====================================
@@ -4,3 +4,4 @@ consistent_declarations.patch
clang-ftbfs.diff
spelling.patch
mayhem.patch
+gcc10.patch
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -1,4 +1,3 @@
-Contact: Amarendran R. Subramanian <subraman at informatik.uni-tuebingen.de>
Name: DIALIGN-T
Reference:
AUTHOR: >
=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
version=4
-http://dialign-tx.gobics.de/download http://dialign-tx.gobics.de/DIALIGN-TX_(.*)\.tar\.gz
+https://dialign-tx.gobics.de/download http://dialign-tx.gobics.de/DIALIGN-TX_(.*)\.tar\.gz
=====================================
source/Makefile.orig deleted
=====================================
@@ -1,39 +0,0 @@
-CC=gcc
-# debug
-#CPPFLAGS=-g -O0 -Q -v -da
-#CPPFLAGS=-g -O0 -fstack-check -Q -v -da
-
-#CPPFLAGS=-g -D_REENTRANT
-
-# THIS IS FOR THE OPTIMIZED ONE
-#CPPFLAGS=-g
-#CPPFLAGS=-O3 -march=i686 -funroll-loops
-CPPFLAGS=-O3 -funroll-loops -march=i686 -mfpmath=sse -msse -mmmx
-#CPPFLAGS=-march=athlon-mp -g -O0 -Wall -D_USE_XOPEN -D__unix__
-
-OBJ_DIR=.
-TARGET=.
-
-OBJ = \
- $(OBJ_DIR)/museq.o \
- $(OBJ_DIR)/parameters.o \
- $(OBJ_DIR)/io.o \
- $(OBJ_DIR)/diag.o \
- $(OBJ_DIR)/alig.o \
- $(OBJ_DIR)/assemble.o \
- $(OBJ_DIR)/prob.o \
- $(OBJ_DIR)/orf.o \
- $(OBJ_DIR)/translate.o \
-
-
-all: museq
-
-clean:
- rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx
-
-museq: $(OBJ)
- rm -f $(TARGET)/$@
- $(CC) -o $(TARGET)/$@ \
- $(OBJ) \
- -pipe -Wall -lm
- mv museq dialign-tx
View it on GitLab: https://salsa.debian.org/med-team/dialign-t/-/compare/cdca3026a12b9f3b4214b35c3542e1f37e847518...725e068229aae8a0d06466919c0d74cef2597c09
--
View it on GitLab: https://salsa.debian.org/med-team/dialign-t/-/compare/cdca3026a12b9f3b4214b35c3542e1f37e847518...725e068229aae8a0d06466919c0d74cef2597c09
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