[med-svn] [Git][med-team/ampliconnoise][master] 2 commits: Remove now unneeded copyright paragraph

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / ampliconnoise


Commits:
7b399baf by Andreas Tille at 2020-07-24T08:12:40+02:00
Remove now unneeded copyright paragraph

- - - - -
f610172d by Andreas Tille at 2020-07-24T08:24:23+02:00
Revert extra binary package since remaining data has a bearable size - with xz compression its even less.

- - - - -


8 changed files:

- − debian/ampliconnoise-examples.install
- + debian/ampliconnoise.examples
- debian/changelog
- debian/control
- debian/copyright
- debian/rules
- − debian/source/include-binaries
- debian/tests/run-unit-test


Changes:

=====================================
debian/ampliconnoise-examples.install deleted
=====================================
@@ -1,2 +0,0 @@
-debian/tests/Run.sh	usr/share/doc/ampliconnoise/examples
-Test/C005.dat		usr/share/doc/ampliconnoise/examples


=====================================
debian/ampliconnoise.examples
=====================================
@@ -0,0 +1,2 @@
+debian/tests/Run.sh
+Test/C005.dat


=====================================
debian/changelog
=====================================
@@ -22,7 +22,6 @@ ampliconnoise (1.29-9) unstable; urgency=medium
   * Trim trailing whitespace.
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
     Repository-Browse.
-  * New binary package featuring example data for testing
 
  -- Pranav Ballaney <ballaneypranav at gmail.com>  Sun, 19 Jul 2020 13:06:00 +0530
 


=====================================
debian/control
=====================================
@@ -32,22 +32,3 @@ Description: removal of noise from 454 sequenced PCR amplicons
  Previously there was a standalone "Pyronoise" by the same authors and
  this package includes an updated version.  There is also a "Denoiser"
  in Qiime which is related but distinct.
-
-Package: ampliconnoise-examples
-Architecture: all
-Depends: ${misc:Depends},
-Enhances: ampliconnoise
-Description: removal of noise from 454 sequenced PCR amplicons (example data)
- AmpliconNoise is a package of applications to clean up high-throughput
- sequence data.  It consists of three main parts:
- .
- Pyronoise - does flowgram-based clustering to spot misreads
- SeqNoise - removes PCR point mutations
- Perseus - removes PCR chimeras without the need for a set of reference
- sequences
- .
- Previously there was a standalone "Pyronoise" by the same authors and
- this package includes an updated version.  There is also a "Denoiser"
- in Qiime which is related but distinct.
- .
- This package contains example data for ampliconnoise.


=====================================
debian/copyright
=====================================
@@ -11,13 +11,6 @@ Files: debian/*
 Copyright: © Tim Booth <tbooth at ceh.ac.uk>
 License: GPL-3
 
-Files: debian/tests/ref/*
-Copyright: 2020 Pranav Ballaney <ballaneypranav at gmail.com>
-License: GPL-3
-Comment: These files were generated by running Test/C005.dat
- through AmpliconNoise as described in debian/tests/run-unit-test,
- as a comparison reference for autopkgtests.
-
 License: GPL-3
  This library is free software; you can redistribute it and/or
  modify it under the terms of the GNU Lesser General Public


=====================================
debian/rules
=====================================
@@ -33,4 +33,6 @@ override_dh_installman:
 	done )
 
 override_dh_compress:
+	# Use xz compression for data file to shrink size even more
+	find debian -name C005.dat -exec xz \{\} \;
 	dh_compress --exclude=.pdf


=====================================
debian/source/include-binaries deleted
=====================================
@@ -1 +0,0 @@
-debian/tests/ref/C005.tar.xz
\ No newline at end of file


=====================================
debian/tests/run-unit-test
=====================================
@@ -13,7 +13,7 @@ cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
 
 cd "${AUTOPKGTEST_TMP}"
 
-gunzip -r *
+unxz *.xz
 
 ./Run.sh C005.dat
 



View it on GitLab: https://salsa.debian.org/med-team/ampliconnoise/-/compare/83bf76b9337419b4e1cc3d053fecff08d755964e...f610172d632ad865d420cf54ca43952f405189c6

-- 
View it on GitLab: https://salsa.debian.org/med-team/ampliconnoise/-/compare/83bf76b9337419b4e1cc3d053fecff08d755964e...f610172d632ad865d420cf54ca43952f405189c6
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