Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
cf294796 by Andreas Tille at 2020-07-27T13:47:46+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,21 +1,21 @@
-Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
+Last-Update: Mon, 27 Jul 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {imaging,covid-19} |
- orthanc | 93 | {practice,covid-19,imaging} |
+ dcmtk | 180 | {imaging,covid-19} |
+ orthanc | 95 | {practice,covid-19,imaging} |
orthanc-wsi | 45 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 37 | {imaging-dev} |
+ gdcm | 34 | {imaging-dev} |
htsjdk | 25 | {bio-dev} |
dicom3tools | 21 | {imaging} |
- dcm2niix | 20 | {imaging} |
dicomscope | 20 | {imaging} |
+ dcm2niix | 18 | {imaging} |
gnumed-server | 18 | {covid-19,practice} |
- gdcm | 14 | {covid-19,imaging} |
+ gdcm | 15 | {covid-19,imaging} |
ngs-sdk | 14 | {bio-dev} |
- gdcm | 13 | {imaging-dev} |
- insighttoolkit4 | 13 | {imaging-dev} |
- ngs-sdk | 11 | {bio-dev} |
+ gdcm | 12 | {imaging-dev} |
+ insighttoolkit4 | 12 | {imaging-dev} |
+ ngs-sdk | 10 | {bio-dev} |
adun.app | 9 | {bio} |
invesalius | 9 | {imaging} |
melting | 8 | {cloud,bio} |
@@ -26,22 +26,17 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
jebl2 | 7 | {bio-dev} |
minc-tools | 7 | {imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
- vtk-dicom | 7 | {imaging} |
bart-view | 6 | {imaging} |
- biomaj3-cli | 6 | {cloud} |
fastlink | 6 | {bio,cloud} |
libminc | 6 | {imaging-dev} |
librg-utils-perl | 6 | {bio} |
- obitools | 6 | {bio} |
openslide | 6 | {imaging} |
orthanc-mysql | 6 | {imaging} |
phyutility | 6 | {bio,cloud} |
- rdp-readseq | 6 | {bio} |
sibsim4 | 6 | {bio,cloud} |
sigma-align | 6 | {bio,cloud,bio-phylogeny} |
- stacks | 6 | {bio} |
- biomaj3-daemon | 5 | {bio} |
- dicompyler | 5 | {oncology} |
+ vtk-dicom | 6 | {imaging} |
+ biomaj3-cli | 5 | {cloud} |
ea-utils | 5 | {bio} |
elastix | 5 | {imaging} |
king | 5 | {typesetting,imaging} |
@@ -50,17 +45,20 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
mauve-aligner | 5 | {bio} |
mipe | 5 | {cloud,bio} |
neobio | 5 | {cloud,bio} |
+ obitools | 5 | {bio} |
orthanc-postgresql | 5 | {imaging} |
piler | 5 | {bio} |
plastimatch | 5 | {imaging} |
pymia | 5 | {imaging-dev} |
- rdp-alignment | 5 | {bio} |
+ rdp-readseq | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
- transtermhp | 5 | {bio} |
+ stacks | 5 | {bio} |
alter-sequence-alignment | 4 | {bio} |
anfo | 4 | {cloud,bio} |
+ biomaj3-daemon | 4 | {bio} |
biosig4c++ | 4 | {physics,imaging} |
daligner | 4 | {bio,bio-ngs} |
+ dicompyler | 4 | {oncology} |
ecopcr | 4 | {bio} |
embassy-domainatrix | 4 | {cloud,bio} |
embassy-domalign | 4 | {cloud,bio} |
@@ -77,6 +75,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
predictprotein | 4 | {bio} |
proalign | 4 | {bio,bio-phylogeny} |
probabel | 4 | {bio,cloud} |
+ rdp-alignment | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
runcircos-gui | 4 | {bio} |
@@ -85,6 +84,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
scythe | 4 | {bio} |
squizz | 4 | {bio,cloud} |
staden | 4 | {bio} |
+ transtermhp | 4 | {bio} |
treeview | 4 | {bio,bio-phylogeny} |
ampliconnoise | 3 | {bio,cloud} |
beast2-mcmc | 3 | {bio} |
@@ -97,6 +97,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
edtsurf | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
+ ghmm | 3 | {bio} |
harvest-tools | 3 | {bio} |
jmodeltest | 3 | {bio-phylogeny,bio} |
libpal-java | 3 | {bio-dev} |
@@ -115,7 +116,6 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
seqmagick | 3 | {bio,covid-19} |
sga | 3 | {bio} |
sprai | 3 | {bio} |
- tnseq-transit | 3 | {bio,covid-19} |
tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
acedb | 2 | {cloud,bio} |
@@ -134,14 +134,12 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
delly | 2 | {covid-19,bio} |
estscan | 2 | {bio} |
getdata | 2 | {bio} |
- ghmm | 2 | {bio} |
hinge | 2 | {bio} |
jellyfish1 | 2 | {bio} |
lamarc | 2 | {bio} |
libctapimkt | 2 | {practice} |
multiqc | 2 | {bio,covid-19} |
murasaki | 2 | {bio} |
- ngs-sdk | 2 | {bio-dev} |
openslide | 2 | {imaging-dev} |
patman | 2 | {bio} |
phast | 2 | {bio} |
@@ -165,6 +163,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
suitename | 2 | {bio} |
surankco | 2 | {bio} |
sweed | 2 | {bio} |
+ tnseq-transit | 2 | {bio,covid-19} |
velvetoptimiser | 2 | {bio} |
yaha | 2 | {bio} |
zalign | 2 | {cloud,bio} |
@@ -176,6 +175,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
libhmsbeagle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
+ ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
plasmidseeker | 1 | {bio} |
@@ -249,8 +249,8 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
quicktree | 0 | {covid-19,bio-phylogeny,bio} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf294796cd266f8d68563fcf9b3b9770b9646afa
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf294796cd266f8d68563fcf9b3b9770b9646afa
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