Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ff1f5886 by Andreas Tille at 2020-06-01T13:50:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,39 +1,39 @@
-Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
+Last-Update: Mon, 01 Jun 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 188 | {imaging,covid-19} |
- orthanc | 94 | {practice,imaging,covid-19} |
- gdcm | 60 | {imaging-dev} |
- orthanc-wsi | 45 | {his,covid-19,imaging,practice,oncology,laboratory} |
- htsjdk | 31 | {bio-dev} |
- dicom3tools | 28 | {imaging} |
- dicomscope | 27 | {imaging} |
- dcm2niix | 26 | {imaging} |
- insighttoolkit4 | 18 | {imaging-dev} |
- gdcm | 17 | {covid-19,imaging} |
+ dcmtk | 190 | {covid-19,imaging} |
+ orthanc | 94 | {imaging,covid-19,practice} |
+ gdcm | 59 | {imaging-dev} |
+ orthanc-wsi | 45 | {imaging,laboratory,practice,covid-19,his,oncology} |
+ htsjdk | 33 | {bio-dev} |
+ dicom3tools | 30 | {imaging} |
+ dicomscope | 29 | {imaging} |
+ dcm2niix | 28 | {imaging} |
+ gdcm | 20 | {covid-19,imaging} |
+ insighttoolkit4 | 19 | {imaging-dev} |
+ minc-tools | 18 | {imaging} |
gnumed-server | 17 | {covid-19,practice} |
- minc-tools | 16 | {imaging} |
- invesalius | 15 | {imaging} |
+ invesalius | 16 | {imaging} |
+ vtk-dicom | 16 | {imaging} |
+ pixelmed | 15 | {imaging} |
king | 14 | {imaging,typesetting} |
- pixelmed | 14 | {imaging} |
- vtk-dicom | 14 | {imaging} |
+ ngs-sdk | 14 | {bio-dev} |
+ plastimatch | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
- ngs-sdk | 12 | {bio-dev} |
- openslide | 12 | {imaging} |
- plastimatch | 12 | {imaging} |
+ openslide | 13 | {imaging} |
stacks | 12 | {bio} |
adun.app | 11 | {bio} |
+ biosig4c++ | 11 | {physics,imaging} |
obitools | 11 | {bio} |
librg-utils-perl | 10 | {bio} |
- psychopy | 10 | {psychology} |
biojava-live | 9 | {bio-dev} |
- biosig4c++ | 9 | {imaging,physics} |
+ psychopy | 9 | {psychology} |
jebl2 | 8 | {bio-dev} |
mipe | 8 | {bio,cloud} |
radiant | 8 | {bio} |
alter-sequence-alignment | 7 | {bio} |
- arden | 7 | {bio,cloud} |
+ arden | 7 | {cloud,bio} |
biomaj3-cli | 7 | {cloud} |
bio-tradis | 7 | {bio-dev,bio} |
bppsuite | 7 | {bio} |
@@ -44,7 +44,6 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
libminc | 7 | {imaging-dev} |
maqview | 7 | {bio} |
ncbi-seg | 7 | {bio} |
- ngs-sdk | 7 | {bio-dev} |
norsp | 7 | {bio} |
piler | 7 | {bio} |
sibsim4 | 7 | {cloud,bio} |
@@ -61,15 +60,16 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
embassy-domalign | 6 | {cloud,bio} |
embassy-domsearch | 6 | {cloud,bio} |
gatb-core | 6 | {bio} |
- melting | 6 | {cloud,bio} |
+ melting | 6 | {bio,cloud} |
mrs | 6 | {bio} |
+ ngs-sdk | 6 | {bio-dev} |
orthanc-webviewer | 6 | {imaging} |
phast | 6 | {bio} |
pymia | 6 | {imaging-dev} |
seer | 6 | {bio} |
seqtools | 6 | {bio} |
sickle | 6 | {bio} |
- sigma-align | 6 | {bio,cloud,bio-phylogeny} |
+ sigma-align | 6 | {bio-phylogeny,bio,cloud} |
staden | 6 | {bio} |
transtermhp | 6 | {bio} |
assemblytics | 5 | {bio} |
@@ -84,7 +84,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
dindel | 5 | {bio} |
elastix | 5 | {imaging} |
estscan | 5 | {bio} |
- freebayes | 5 | {bio,covid-19} |
+ freebayes | 5 | {covid-19,bio} |
harvest-tools | 5 | {bio} |
ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
@@ -92,28 +92,27 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
lagan | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
libncl | 5 | {bio} |
- mapsembler2 | 5 | {cloud,bio} |
+ mapsembler2 | 5 | {bio,cloud} |
murasaki | 5 | {bio} |
neobio | 5 | {cloud,bio} |
nutsqlite | 5 | {tools} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
orthanc-mysql | 5 | {imaging} |
paraclu | 5 | {cloud,bio} |
- phyutility | 5 | {bio,cloud} |
+ phyutility | 5 | {cloud,bio} |
predictprotein | 5 | {bio} |
- prime-phylo | 5 | {bio,cloud} |
+ prime-phylo | 5 | {cloud,bio} |
probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
- rtax | 5 | {cloud,bio} |
+ rtax | 5 | {bio,cloud} |
saint | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
seqtools | 5 | {bio} |
snap-aligner | 5 | {bio} |
soapsnp | 5 | {bio} |
squizz | 5 | {cloud,bio} |
treeview | 5 | {bio,bio-phylogeny} |
- zalign | 5 | {cloud,bio} |
+ zalign | 5 | {bio,cloud} |
bart-view | 4 | {imaging} |
canu | 4 | {bio} |
centrifuge | 4 | {covid-19,bio} |
@@ -122,7 +121,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
dicompyler | 4 | {oncology} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- gasic | 4 | {cloud,bio} |
+ gasic | 4 | {bio,cloud} |
ghmm | 4 | {bio} |
jaligner | 4 | {bio} |
jmodeltest | 4 | {bio-phylogeny,bio} |
@@ -130,16 +129,17 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
microbegps | 4 | {bio} |
mlv-smile | 4 | {cloud,bio} |
orthanc-postgresql | 4 | {imaging} |
- perm | 4 | {cloud,bio} |
+ perm | 4 | {bio,cloud} |
phybin | 4 | {bio} |
placnet | 4 | {bio} |
- proalign | 4 | {bio,bio-phylogeny} |
+ proalign | 4 | {bio-phylogeny,bio} |
pscan-chip | 4 | {bio} |
quorum | 4 | {bio} |
rdp-alignment | 4 | {bio} |
rdp-readseq | 4 | {bio} |
roguenarok | 4 | {bio} |
runcircos-gui | 4 | {bio} |
+ salmon | 4 | {covid-19,bio} |
scythe | 4 | {bio} |
segemehl | 4 | {bio} |
seqtools | 4 | {bio} |
@@ -150,7 +150,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
vsearch | 4 | {bio,covid-19} |
yaha | 4 | {bio} |
beast2-mcmc | 3 | {bio} |
- blasr | 3 | {bio-ngs,bio} |
+ blasr | 3 | {bio,bio-ngs} |
dwgsim | 3 | {bio} |
elph | 3 | {bio} |
hinge | 3 | {bio} |
@@ -164,7 +164,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
pbdagcon | 3 | {bio} |
phipack | 3 | {bio} |
poretools | 3 | {bio} |
- prottest | 3 | {bio,bio-phylogeny} |
+ prottest | 3 | {bio-phylogeny,bio} |
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
rambo-k | 3 | {bio} |
@@ -181,13 +181,13 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
velvetoptimiser | 3 | {bio} |
atropos | 2 | {bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
- biosig4c++ | 2 | {imaging-dev,physics} |
blimps | 2 | {bio} |
busco | 2 | {covid-19,bio} |
getdata | 2 | {bio} |
kma | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libgff | 2 | {bio-dev} |
+ libsbml | 2 | {bio-dev} |
libvistaio | 2 | {imaging-dev} |
logol | 2 | {bio} |
mencal | 2 | {tools} |
@@ -195,22 +195,23 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
nanook | 2 | {bio} |
ngs-sdk | 2 | {bio-dev} |
openslide | 2 | {imaging-dev} |
- oscar | 2 | {data,tools,practice} |
+ oscar | 2 | {practice,data,tools} |
pal2nal | 2 | {bio} |
+ papyrus | 2 | {imaging-dev} |
pilon | 2 | {bio} |
plasmidseeker | 2 | {bio} |
rampler | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
+ samblaster | 2 | {covid-19,bio} |
samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
sift | 2 | {bio} |
- stringtie | 2 | {covid-19,bio} |
+ stringtie | 2 | {bio,covid-19} |
sweed | 2 | {bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
acedb | 1 | {cloud,bio} |
cufflinks | 1 | {cloud,bio} |
- embassy-phylip | 1 | {bio,cloud} |
+ embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
@@ -219,11 +220,9 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
libctapimkt | 1 | {practice} |
libmaus2 | 1 | {bio-dev,covid-19} |
libmialm | 1 | {imaging-dev} |
- libsbml | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
- papyrus | 1 | {imaging-dev} |
- python-py2bit | 1 | {bio-dev,bio} |
+ python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
@@ -233,7 +232,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
varscan | 1 | {covid-19,bio} |
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
- augur | 0 | {covid-19,bio} |
+ augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -259,7 +258,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
@@ -274,7 +273,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
- multiqc | 0 | {covid-19,bio} |
+ multiqc | 0 | {bio,covid-19} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
@@ -284,19 +283,19 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pycoqc | 0 | {covid-19,bio} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
- thesias | 0 | {covid-19,bio} |
+ thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
bustools | -1 | {covid-19,bio} |
- cat-bat | -1 | {bio,covid-19} |
+ cat-bat | -1 | {covid-19,bio} |
flash | -1 | {bio,covid-19} |
-(325 rows)
+(324 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ff1f588638d1604fecac86dadb2a25148d454c1d
--
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