[med-svn] [Git][med-team/lumpy-sv][master] 5 commits: Its to hard to remove bedtools code copy since bedtools has no development library

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / lumpy-sv


Commits:
ea35aff6 by Andreas Tille at 2020-06-01T15:10:50+02:00
Its to hard to remove bedtools code copy since bedtools has no development library

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02abd546 by Andreas Tille at 2020-06-01T15:11:22+02:00
New upstream version 0.3.0+dfsg
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38484fe2 by Andreas Tille at 2020-06-01T15:11:48+02:00
Update upstream source from tag 'upstream/0.3.0+dfsg'

Update to upstream version '0.3.0+dfsg'
with Debian dir cf23e95201bfb0739f6a0dabf129360ac56471ab
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e3e71922 by Andreas Tille at 2020-06-01T15:14:42+02:00
Add copyright for bedtools files

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b501ff25 by Andreas Tille at 2020-06-01T16:03:49+02:00
Attempt to build including bedtools code copy

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29 changed files:

- debian/control
- debian/copyright
- debian/patches/use_debian_packaged_libs.patch
- + src/utils/BamTools-Ancillary/BamAncillary.cpp
- + src/utils/BamTools-Ancillary/BamAncillary.h
- + src/utils/BamTools-Ancillary/Makefile
- + src/utils/BlockedIntervals/BlockedIntervals.cpp
- + src/utils/BlockedIntervals/BlockedIntervals.h
- + src/utils/BlockedIntervals/Makefile
- + src/utils/Point/Point.h
- + src/utils/VectorOps/Makefile
- + src/utils/VectorOps/VectorOps.cpp
- + src/utils/VectorOps/VectorOps.h
- + src/utils/bedFile/Makefile
- + src/utils/bedFile/bedFile.cpp
- + src/utils/bedFile/bedFile.h
- + src/utils/bedFilePE/Makefile
- + src/utils/bedFilePE/bedFilePE.cpp
- + src/utils/bedFilePE/bedFilePE.h
- + src/utils/bedGraphFile/Makefile
- + src/utils/bedGraphFile/bedGraphFile.cpp
- + src/utils/bedGraphFile/bedGraphFile.h
- + src/utils/chromsweep/Makefile
- + src/utils/chromsweep/chromsweep.cpp
- + src/utils/chromsweep/chromsweep.h
- + src/utils/fileType/Makefile
- + src/utils/fileType/fileType.cpp
- + src/utils/fileType/fileType.h
- + src/utils/genomeFile/Makefile


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/lumpy-sv/-/compare/8df1c62c3a5aae8612b1b5ae88724d03b73817d7...b501ff253c69794a3d1113ce47b5feb78ae2cc99

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View it on GitLab: https://salsa.debian.org/med-team/lumpy-sv/-/compare/8df1c62c3a5aae8612b1b5ae88724d03b73817d7...b501ff253c69794a3d1113ce47b5feb78ae2cc99
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