[med-svn] [Git][med-team/diamond-aligner][master] 8 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / diamond-aligner


Commits:
eb8320a7 by Andreas Tille at 2020-06-02T10:25:50+02:00
routine-update: New upstream version

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7f2f7c8d by Andreas Tille at 2020-06-02T10:25:51+02:00
New upstream version 0.9.33
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c4d55a65 by Andreas Tille at 2020-06-02T10:25:53+02:00
Update upstream source from tag 'upstream/0.9.33'

Update to upstream version '0.9.33'
with Debian dir b8e0f39246bb7990530a357549e2db1f7e30ec2e
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66ce27bb by Andreas Tille at 2020-06-02T10:25:54+02:00
routine-update: debhelper-compat 13

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bc30725e by Andreas Tille at 2020-06-02T10:40:24+02:00
Deactivate patches applied upstream

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00c1d865 by Andreas Tille at 2020-06-02T10:54:53+02:00
Upstream applied all patches

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0efad89d by Andreas Tille at 2020-06-02T11:05:46+02:00
Upstream confirmed that the new version has solved the build issues

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ba948548 by Andreas Tille at 2020-06-02T11:08:23+02:00
Upload to unstable

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30 changed files:

- .travis.yml
- CMakeLists.txt
- debian/changelog
- debian/control
- − debian/patches/63b3e686f41272851a87c632441ba8c6484a2fe2.patch
- − debian/patches/82feea2aee5c82e283704b9317cb5e8abc625f90.patch
- − debian/patches/avoid_unwanted_optimisation.patch
- − debian/patches/f5daf92d3ece50ebb0c0a5f9b4133769347ec55b.patch
- − debian/patches/series
- src/ChangeLog
- src/align/align.cpp
- src/align/extend.cpp
- src/align/gapped.cpp
- src/align/gapped_filter.cpp
- src/align/legacy/banded_swipe_pipeline.cpp
- src/align/legacy/query_mapper.cpp
- src/align/legacy/query_mapper.h
- src/basic/basic.cpp
- src/basic/config.cpp
- src/basic/config.h
- src/basic/const.h
- src/basic/masking.cpp
- src/basic/masking.h
- src/basic/match.h
- src/basic/packed_loc.h
- src/basic/reduction.h
- src/basic/score_matrix.cpp
- src/basic/score_matrix.h
- src/basic/sequence.h
- src/basic/shape.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/ad29343aa47e7412653265cdb6fab9a613053dec...ba94854844318fb8982320cb5ce59368ac199615

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View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/ad29343aa47e7412653265cdb6fab9a613053dec...ba94854844318fb8982320cb5ce59368ac199615
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