Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ec855685 by Andreas Tille at 2020-06-04T13:45:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,21 +1,21 @@
-Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
+Last-Update: Thu, 04 Jun 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 191 | {covid-19,imaging} |
orthanc | 95 | {imaging,covid-19,practice} |
- gdcm | 56 | {imaging-dev} |
+ gdcm | 58 | {imaging-dev} |
orthanc-wsi | 44 | {imaging,laboratory,practice,covid-19,his,oncology} |
htsjdk | 33 | {bio-dev} |
dicom3tools | 30 | {imaging} |
dcm2niix | 29 | {imaging} |
- dicomscope | 28 | {imaging} |
+ dicomscope | 27 | {imaging} |
gdcm | 19 | {covid-19,imaging} |
minc-tools | 18 | {imaging} |
gnumed-server | 17 | {covid-19,practice} |
insighttoolkit4 | 17 | {imaging-dev} |
+ ngs-sdk | 16 | {bio-dev} |
invesalius | 15 | {imaging} |
- ngs-sdk | 14 | {bio-dev} |
plastimatch | 14 | {imaging} |
vtk-dicom | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
@@ -23,12 +23,13 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
pixelmed | 13 | {imaging} |
stacks | 13 | {bio} |
adun.app | 12 | {bio} |
+ obitools | 12 | {bio} |
openslide | 12 | {imaging} |
biosig4c++ | 11 | {physics,imaging} |
- obitools | 11 | {bio} |
biojava-live | 9 | {bio-dev} |
librg-utils-perl | 9 | {bio} |
radiant | 9 | {bio} |
+ biomaj3-cli | 8 | {cloud} |
ea-utils | 8 | {bio} |
ecopcr | 8 | {bio} |
fastlink | 8 | {cloud,bio} |
@@ -39,11 +40,9 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
norsp | 8 | {bio} |
psychopy | 8 | {psychology} |
sibsim4 | 8 | {cloud,bio} |
- staden | 8 | {bio} |
alter-sequence-alignment | 7 | {bio} |
ampliconnoise | 7 | {bio,cloud} |
arden | 7 | {cloud,bio} |
- biomaj3-cli | 7 | {cloud} |
bio-tradis | 7 | {bio-dev,bio} |
bppsuite | 7 | {bio} |
embassy-domainatrix | 7 | {bio,cloud} |
@@ -56,19 +55,24 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
pymia | 7 | {imaging-dev} |
sickle | 7 | {bio} |
sigma-align | 7 | {bio-phylogeny,bio,cloud} |
+ staden | 7 | {bio} |
abacas | 6 | {bio,covid-19} |
anfo | 6 | {cloud,bio} |
+ bandage | 6 | {bio} |
beads | 6 | {bio} |
+ biomaj3-daemon | 6 | {bio} |
bitseq | 6 | {bio} |
brig | 6 | {bio} |
- cluster3 | 6 | {bio} |
daligner | 6 | {bio,bio-ngs} |
dazzdb | 6 | {bio} |
+ delly | 6 | {covid-19,bio} |
edtsurf | 6 | {bio} |
elastix | 6 | {imaging} |
embassy-domalign | 6 | {cloud,bio} |
+ estscan | 6 | {bio} |
gatb-core | 6 | {bio} |
king-probe | 6 | {bio} |
+ lagan | 6 | {bio} |
libminc | 6 | {imaging-dev} |
mapsembler2 | 6 | {bio,cloud} |
mrs | 6 | {bio} |
@@ -88,29 +92,26 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
snap-aligner | 6 | {bio} |
soapsnp | 6 | {bio} |
squizz | 6 | {cloud,bio} |
+ tracetuner | 6 | {bio} |
transtermhp | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
vsearch | 6 | {bio,covid-19} |
zalign | 6 | {bio,cloud} |
assemblytics | 5 | {bio} |
baitfisher | 5 | {bio} |
- bandage | 5 | {bio} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
- biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
centrifuge | 5 | {covid-19,bio} |
clonalframeml | 5 | {covid-19,bio} |
clonalorigin | 5 | {bio} |
+ cluster3 | 5 | {bio} |
dascrubber | 5 | {bio} |
- delly | 5 | {covid-19,bio} |
- dicompyler | 5 | {oncology} |
dindel | 5 | {bio} |
- estscan | 5 | {bio} |
gasic | 5 | {bio,cloud} |
+ ghmm | 5 | {bio} |
harvest-tools | 5 | {bio} |
ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
- lagan | 5 | {bio} |
libncl | 5 | {bio} |
microbegps | 5 | {bio} |
mlv-smile | 5 | {cloud,bio} |
@@ -132,14 +133,17 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
scythe | 5 | {bio} |
sga | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
- tracetuner | 5 | {bio} |
yaha | 5 | {bio} |
bart-view | 4 | {imaging} |
+ beast2-mcmc | 4 | {bio} |
+ blasr | 4 | {bio,bio-ngs} |
canu | 4 | {bio} |
+ dicompyler | 4 | {oncology} |
dwgsim | 4 | {bio} |
+ elph | 4 | {bio} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- ghmm | 4 | {bio} |
+ hinge | 4 | {bio} |
jaligner | 4 | {bio} |
jmodeltest | 4 | {bio-phylogeny,bio} |
lamarc | 4 | {bio} |
@@ -150,15 +154,22 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
mauve-aligner | 4 | {bio} |
mhap | 4 | {bio-ngs,bio} |
mptp | 4 | {bio} |
+ pal2nal | 4 | {bio} |
patman | 4 | {bio} |
+ pbdagcon | 4 | {bio} |
phipack | 4 | {bio} |
- poretools | 4 | {bio} |
+ pilon | 4 | {bio} |
+ plasmidseeker | 4 | {bio} |
prottest | 4 | {bio-phylogeny,bio} |
qcumber | 4 | {bio} |
qrisk2 | 4 | {practice} |
rambo-k | 4 | {bio} |
+ rampler | 4 | {bio} |
rdp-classifier | 4 | {bio} |
+ relion | 4 | {bio} |
+ samblaster | 4 | {covid-19,bio} |
scrm | 4 | {bio} |
+ segemehl | 4 | {bio} |
seqmagick | 4 | {covid-19,bio} |
seqsero | 4 | {bio} |
seqtools | 4 | {bio} |
@@ -167,47 +178,31 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
sprai | 4 | {bio} |
suitename | 4 | {bio} |
surankco | 4 | {bio} |
+ sweed | 4 | {bio} |
tnseq-transit | 4 | {covid-19,bio} |
+ trace2dbest | 4 | {bio} |
+ tvc | 4 | {bio} |
velvetoptimiser | 4 | {bio} |
- beast2-mcmc | 3 | {bio} |
- blasr | 3 | {bio,bio-ngs} |
- elph | 3 | {bio} |
getdata | 3 | {bio} |
- hinge | 3 | {bio} |
logol | 3 | {bio} |
metaphlan2 | 3 | {bio} |
nanook | 3 | {bio} |
+ ngs-sdk | 3 | {bio-dev} |
openslide | 3 | {imaging-dev} |
- pal2nal | 3 | {bio} |
- pbdagcon | 3 | {bio} |
- pilon | 3 | {bio} |
- plasmidseeker | 3 | {bio} |
- rampler | 3 | {bio} |
- relion | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
- segemehl | 3 | {bio} |
- sweed | 3 | {bio} |
- trace2dbest | 3 | {bio} |
- tvc | 3 | {bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
blimps | 2 | {bio} |
busco | 2 | {covid-19,bio} |
- emboss-explorer | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
mencal | 2 | {tools} |
- ngs-sdk | 2 | {bio-dev} |
papyrus | 2 | {imaging-dev} |
relion | 2 | {bio} |
sift | 2 | {bio} |
- stringtie | 2 | {bio,covid-19} |
acedb | 1 | {cloud,bio} |
- atropos | 1 | {bio} |
ctn | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
+ emboss-explorer | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
- kma | 1 | {bio} |
- kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmialm | 1 | {imaging-dev} |
@@ -219,15 +214,13 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
- samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
simpleitk | 1 | {imaging-dev} |
- skesa | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
srf | 1 | {bio-dev} |
- varscan | 1 | {covid-19,bio} |
+ stringtie | 1 | {bio,covid-19} |
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
+ atropos | 0 | {bio} |
augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
@@ -241,6 +234,8 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
fis-gtm | 0 | {his} |
htscodecs | 0 | {covid-19,bio-dev} |
ivar | 0 | {covid-19} |
+ kma | 0 | {bio} |
+ kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -280,19 +275,23 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pycoqc | 0 | {covid-19,bio} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
+ samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
+ skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
+ spaln | 0 | {bio,covid-19} |
thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
+ varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
bustools | -1 | {covid-19,bio} |
cat-bat | -1 | {covid-19,bio} |
flash | -1 | {bio,covid-19} |
-(321 rows)
+(320 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ec855685bab1e1faaaa7ea021455f177d6dd3551
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ec855685bab1e1faaaa7ea021455f177d6dd3551
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