[med-svn] [Git][med-team/pufferfish][master] 4 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / pufferfish


Commits:
ffd46ebf by Michael R. Crusoe at 2020-06-05T08:47:09+02:00
routine-update: New upstream version

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edb5bd06 by Michael R. Crusoe at 2020-06-05T08:47:10+02:00
New upstream version 1.2.1
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a1b24853 by Michael R. Crusoe at 2020-06-05T08:47:15+02:00
Update upstream source from tag 'upstream/1.2.1'

Update to upstream version '1.2.1'
with Debian dir e1d32dbdc20905f7d3c3daa6f03cf66792b35b58
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0f15a119 by Michael R. Crusoe at 2020-06-05T08:56:17+02:00
refresh patches

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30 changed files:

- .drone/build.sh
- + .github/workflows/cpp.yml
- CMakeLists.txt
- + CODE_OF_CONDUCT.md
- README.md
- − config.json
- + current_version.txt
- debian/changelog
- debian/patches/use-debian-libs
- − estimate.sh
- external/twopaco/common/junctionapi/junctionapi.h
- external/twopaco/common/streamfastaparser.cpp
- external/twopaco/graphconstructor/assemblyedgeconstructor.h
- external/twopaco/graphconstructor/bifurcationstorage.h
- external/twopaco/graphconstructor/candidateoccurence.h
- external/twopaco/graphconstructor/common.h
- external/twopaco/graphconstructor/concurrentbitvector.cpp
- external/twopaco/graphconstructor/concurrentbitvector.h
- external/twopaco/graphconstructor/constructor.cpp
- external/twopaco/graphconstructor/test.cpp
- external/twopaco/graphconstructor/vertexenumerator.cpp
- external/twopaco/graphconstructor/vertexenumerator.h
- external/twopaco/graphdump/compact_vector/compact_iterator.hpp
- external/twopaco/graphdump/compact_vector/compact_vector.hpp
- external/twopaco/graphdump/graphdump.cpp
- external/twopaco/graphdump/binaryWriter.h → external/twopaco/graphdump/graphdumpBinaryWriter.hpp
- include/BooPHF.hpp
- include/CanonicalKmer.hpp
- include/Kmer.hpp
- include/MemChainer.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/compare/cad8f22aa2bb34a4e661e94c6550c13ba7986efc...0f15a119bde0832a443d3bef83505b50f80a99b2

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View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/compare/cad8f22aa2bb34a4e661e94c6550c13ba7986efc...0f15a119bde0832a443d3bef83505b50f80a99b2
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