Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
42cd6325 by Andreas Tille at 2020-06-07T13:45:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,101 +1,101 @@
-Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
+Last-Update: Sun, 07 Jun 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 186 | {imaging,covid-19} |
- orthanc | 91 | {imaging,practice,covid-19} |
- gdcm | 55 | {imaging-dev} |
- orthanc-wsi | 43 | {laboratory,practice,imaging,his,oncology,covid-19} |
+ dcmtk | 187 | {covid-19,imaging} |
+ orthanc | 91 | {imaging,covid-19,practice} |
+ gdcm | 54 | {imaging-dev} |
+ orthanc-wsi | 42 | {covid-19,his,laboratory,practice,imaging,oncology} |
htsjdk | 30 | {bio-dev} |
dcm2niix | 29 | {imaging} |
dicom3tools | 29 | {imaging} |
- dicomscope | 26 | {imaging} |
- gdcm | 19 | {covid-19,imaging} |
+ dicomscope | 27 | {imaging} |
+ gdcm | 20 | {imaging,covid-19} |
+ gnumed-server | 19 | {practice,covid-19} |
minc-tools | 18 | {imaging} |
- gnumed-server | 17 | {covid-19,practice} |
insighttoolkit4 | 17 | {imaging-dev} |
ngs-sdk | 16 | {bio-dev} |
invesalius | 15 | {imaging} |
plastimatch | 14 | {imaging} |
- vtk-dicom | 14 | {imaging} |
- king | 13 | {typesetting,imaging} |
+ king | 13 | {imaging,typesetting} |
pixelmed | 13 | {imaging} |
+ vtk-dicom | 13 | {imaging} |
+ adun.app | 12 | {bio} |
gdcm | 12 | {imaging-dev} |
openslide | 12 | {imaging} |
- adun.app | 11 | {bio} |
biosig4c++ | 11 | {physics,imaging} |
- obitools | 11 | {bio} |
stacks | 11 | {bio} |
+ obitools | 10 | {bio} |
biojava-live | 8 | {bio-dev} |
- ngs-sdk | 8 | {bio-dev} |
+ jebl2 | 8 | {bio-dev} |
psychopy | 8 | {psychology} |
radiant | 8 | {bio} |
biomaj3-cli | 7 | {cloud} |
- ea-utils | 7 | {bio} |
ecopcr | 7 | {bio} |
fastlink | 7 | {bio,cloud} |
- jebl2 | 7 | {bio-dev} |
+ indelible | 7 | {bio} |
librg-utils-perl | 7 | {bio} |
- mipe | 7 | {cloud,bio} |
+ mipe | 7 | {bio,cloud} |
ncbi-seg | 7 | {bio} |
- orthanc-webviewer | 7 | {imaging} |
- pymia | 7 | {imaging-dev} |
+ ngs-sdk | 7 | {bio-dev} |
sibsim4 | 7 | {bio,cloud} |
alter-sequence-alignment | 6 | {bio} |
- ampliconnoise | 6 | {cloud,bio} |
- arden | 6 | {bio,cloud} |
+ ampliconnoise | 6 | {bio,cloud} |
+ arden | 6 | {cloud,bio} |
bio-tradis | 6 | {bio,bio-dev} |
bppsuite | 6 | {bio} |
+ cluster3 | 6 | {bio} |
+ ea-utils | 6 | {bio} |
elastix | 6 | {imaging} |
- embassy-domainatrix | 6 | {bio,cloud} |
+ embassy-domainatrix | 6 | {cloud,bio} |
embassy-domsearch | 6 | {cloud,bio} |
- indelible | 6 | {bio} |
libminc | 6 | {imaging-dev} |
maqview | 6 | {bio} |
melting | 6 | {cloud,bio} |
- mrs | 6 | {bio} |
- orthanc-dicomweb | 6 | {covid-19,imaging} |
- orthanc-mysql | 6 | {imaging} |
+ orthanc-webviewer | 6 | {imaging} |
+ phyutility | 6 | {bio,cloud} |
piler | 6 | {bio} |
sickle | 6 | {bio} |
- sigma-align | 6 | {bio,bio-phylogeny,cloud} |
+ sigma-align | 6 | {cloud,bio-phylogeny,bio} |
staden | 6 | {bio} |
- abacas | 5 | {bio,covid-19} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ abacas | 5 | {covid-19,bio} |
anfo | 5 | {bio,cloud} |
bandage | 5 | {bio} |
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
bitseq | 5 | {bio} |
brig | 5 | {bio} |
- cluster3 | 5 | {bio} |
- daligner | 5 | {bio,bio-ngs} |
+ daligner | 5 | {bio-ngs,bio} |
dazzdb | 5 | {bio} |
- delly | 5 | {covid-19,bio} |
+ delly | 5 | {bio,covid-19} |
edtsurf | 5 | {bio} |
embassy-domalign | 5 | {cloud,bio} |
estscan | 5 | {bio} |
gatb-core | 5 | {bio} |
king-probe | 5 | {bio} |
lagan | 5 | {bio} |
- mapsembler2 | 5 | {bio,cloud} |
+ mapsembler2 | 5 | {cloud,bio} |
+ mrs | 5 | {bio} |
neobio | 5 | {bio,cloud} |
nutsqlite | 5 | {tools} |
- orthanc-postgresql | 5 | {imaging} |
- paraclu | 5 | {bio,cloud} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
+ orthanc-mysql | 5 | {imaging} |
+ paraclu | 5 | {cloud,bio} |
phast | 5 | {bio} |
- phyutility | 5 | {cloud,bio} |
- prime-phylo | 5 | {cloud,bio} |
- probabel | 5 | {cloud,bio} |
+ prime-phylo | 5 | {bio,cloud} |
+ probabel | 5 | {bio,cloud} |
pscan-tfbs | 5 | {bio} |
+ pymia | 5 | {imaging-dev} |
rtax | 5 | {bio,cloud} |
saint | 5 | {bio} |
seqtools | 5 | {bio} |
snap-aligner | 5 | {bio} |
soapsnp | 5 | {bio} |
+ spread-phy | 5 | {bio,bio-phylogeny} |
squizz | 5 | {bio,cloud} |
tracetuner | 5 | {bio} |
transtermhp | 5 | {bio} |
- treeview | 5 | {bio-phylogeny,bio} |
vsearch | 5 | {covid-19,bio} |
zalign | 5 | {bio,cloud} |
assemblytics | 4 | {bio} |
@@ -109,8 +109,8 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
dascrubber | 4 | {bio} |
dicompyler | 4 | {oncology} |
dindel | 4 | {bio} |
- dwgsim | 4 | {bio} |
gasic | 4 | {cloud,bio} |
+ getdata | 4 | {bio} |
ghmm | 4 | {bio} |
harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
@@ -118,9 +118,10 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
libdivsufsort | 4 | {bio-dev} |
libncl | 4 | {bio} |
microbegps | 4 | {bio} |
- mlv-smile | 4 | {bio,cloud} |
+ mlv-smile | 4 | {cloud,bio} |
murasaki | 4 | {bio} |
- perm | 4 | {bio,cloud} |
+ orthanc-postgresql | 4 | {imaging} |
+ perm | 4 | {cloud,bio} |
phybin | 4 | {bio} |
placnet | 4 | {bio} |
predictprotein | 4 | {bio} |
@@ -132,29 +133,28 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
repeatmasker-recon | 4 | {bio} |
roguenarok | 4 | {bio} |
runcircos-gui | 4 | {bio} |
- salmon | 4 | {bio,covid-19} |
scythe | 4 | {bio} |
seqsero | 4 | {bio} |
sga | 4 | {bio} |
- spread-phy | 4 | {bio-phylogeny,bio} |
tnseq-transit | 4 | {bio,covid-19} |
yaha | 4 | {bio} |
beast2-mcmc | 3 | {bio} |
blasr | 3 | {bio-ngs,bio} |
canu | 3 | {bio} |
+ dwgsim | 3 | {bio} |
elph | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
- getdata | 3 | {bio} |
hinge | 3 | {bio} |
jaligner | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
lamarc | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
+ libsbml | 3 | {bio-dev} |
maffilter | 3 | {bio} |
mauve-aligner | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
+ mhap | 3 | {bio,bio-ngs} |
mptp | 3 | {bio} |
openslide | 3 | {imaging-dev} |
pal2nal | 3 | {bio} |
@@ -163,14 +163,15 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
phipack | 3 | {bio} |
pilon | 3 | {bio} |
plasmidseeker | 3 | {bio} |
- proalign | 3 | {bio-phylogeny,bio} |
+ proalign | 3 | {bio,bio-phylogeny} |
prottest | 3 | {bio-phylogeny,bio} |
qcumber | 3 | {bio} |
rambo-k | 3 | {bio} |
rampler | 3 | {bio} |
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
+ salmon | 3 | {covid-19,bio} |
+ samblaster | 3 | {bio,covid-19} |
scrm | 3 | {bio} |
segemehl | 3 | {bio} |
seqmagick | 3 | {covid-19,bio} |
@@ -184,21 +185,18 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
trace2dbest | 3 | {bio} |
tvc | 3 | {bio} |
velvetoptimiser | 3 | {bio} |
- biosig4c++ | 2 | {imaging-dev,physics} |
biosig4c++ | 2 | {physics,imaging-dev} |
blimps | 2 | {bio} |
- busco | 2 | {bio,covid-19} |
+ busco | 2 | {covid-19,bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
- libsbml | 2 | {bio-dev} |
logol | 2 | {bio} |
mencal | 2 | {tools} |
metaphlan2 | 2 | {bio} |
nanook | 2 | {bio} |
- ngs-sdk | 2 | {bio-dev} |
papyrus | 2 | {imaging-dev} |
relion | 2 | {bio} |
sift | 2 | {bio} |
- acedb | 1 | {cloud,bio} |
+ acedb | 1 | {bio,cloud} |
ctn | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
@@ -209,8 +207,9 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
libvistaio | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
murasaki | 1 | {bio} |
+ ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {tools,data,practice} |
+ oscar | 1 | {data,practice,tools} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
seqan | 1 | {bio-dev} |
@@ -227,10 +226,10 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
cufflinks | 0 | {bio,cloud} |
- drop-seq | 0 | {bio,covid-19} |
+ drop-seq | 0 | {covid-19,bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
ivar | 0 | {covid-19} |
kma | 0 | {bio} |
kmerresistance | 0 | {bio} |
@@ -248,7 +247,7 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
@@ -262,9 +261,9 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
- multiqc | 0 | {covid-19,bio} |
+ multiqc | 0 | {bio,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
@@ -272,8 +271,7 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
- pycoqc | 0 | {bio,covid-19} |
- python-py2bit | 0 | {bio-dev,bio} |
+ python-py2bit | 0 | {bio,bio-dev} |
relion | 0 | {bio} |
relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
@@ -282,15 +280,16 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000
seq-gen | 0 | {bio} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {bio,covid-19} |
- stringtie | 0 | {bio,covid-19} |
- thesias | 0 | {covid-19,bio} |
+ stringtie | 0 | {covid-19,bio} |
+ thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
+ varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
- bustools | -1 | {covid-19,bio} |
- cat-bat | -1 | {bio,covid-19} |
+ bustools | -1 | {bio,covid-19} |
+ cat-bat | -1 | {covid-19,bio} |
flash | -1 | {bio,covid-19} |
-(319 rows)
+ pycoqc | -1 | {bio,covid-19} |
+(318 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/42cd63253390e74538b6d9032ed4f690ebc5d145
--
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