[med-svn] [Git][med-team/bppsuite][master] 12 commits: routine-update: Standards-Version: 4.5.0

Andreas Tille gitlab at salsa.debian.org
Fri Jun 12 21:24:04 BST 2020



Andreas Tille pushed to branch master at Debian Med / bppsuite


Commits:
0885d25f by Andreas Tille at 2020-06-12T21:22:38+02:00
routine-update: Standards-Version: 4.5.0

- - - - -
b546d589 by Andreas Tille at 2020-06-12T21:22:38+02:00
routine-update: debhelper-compat 13

- - - - -
3b97108e by Andreas Tille at 2020-06-12T21:22:43+02:00
routine-update: Remove trailing whitespace in debian/changelog

- - - - -
f487a0e1 by Andreas Tille at 2020-06-12T21:22:43+02:00
routine-update: Remove trailing whitespace in debian/copyright

- - - - -
173c0c9f by Andreas Tille at 2020-06-12T21:22:43+02:00
routine-update: Add salsa-ci file

- - - - -
3e81169b by Andreas Tille at 2020-06-12T21:22:43+02:00
routine-update: Rules-Requires-Root: no

- - - - -
d015c6e6 by Andreas Tille at 2020-06-12T21:22:44+02:00
Trim trailing whitespace.

Fixes: lintian: file-contains-trailing-whitespace
See-also: https://lintian.debian.org/tags/file-contains-trailing-whitespace.html

- - - - -
1749c858 by Andreas Tille at 2020-06-12T21:22:52+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html


Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

- - - - -
88f6fdb9 by Andreas Tille at 2020-06-12T21:22:52+02:00
Refer to specific version of license GPL-2+.

Fixes: lintian: copyright-refers-to-symlink-license
See-also: https://lintian.debian.org/tags/copyright-refers-to-symlink-license.html


Fixes: lintian: copyright-refers-to-versionless-license-file
See-also: https://lintian.debian.org/tags/copyright-refers-to-versionless-license-file.html

- - - - -
52e6135a by Andreas Tille at 2020-06-12T21:22:52+02:00
Fix day-of-week for changelog entry 0.3.0.

Fixes: lintian: debian-changelog-has-wrong-day-of-week
See-also: https://lintian.debian.org/tags/debian-changelog-has-wrong-day-of-week.html

- - - - -
342c2fd1 by Andreas Tille at 2020-06-12T21:44:02+02:00
Cleanup installation of manpages

- - - - -
c596cdd8 by Andreas Tille at 2020-06-12T22:06:38+02:00
Upload to unstable

- - - - -


7 changed files:

- − debian/bppsuite.manpages
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- + debian/salsa-ci.yml
- debian/upstream/metadata


Changes:

=====================================
debian/bppsuite.manpages deleted
=====================================
@@ -1 +0,0 @@
-man/*.1


=====================================
debian/changelog
=====================================
@@ -1,10 +1,27 @@
-bppsuite (2.4.1-2) UNRELEASED; urgency=medium
+bppsuite (2.4.1-2) unstable; urgency=medium
 
+  * Team upload.
+
+  [ Pranav Ballaney ]
   * Add reference data for autopkgtests
   * Install examples for bppsuite
   * Add autopkgtests
   * Install docs
 
+  [ Andreas Tille ]
+  * Standards-Version: 4.5.0 (routine-update)
+  * debhelper-compat 13 (routine-update)
+  * Remove trailing whitespace in debian/changelog (routine-update)
+  * Remove trailing whitespace in debian/copyright (routine-update)
+  * Add salsa-ci file (routine-update)
+  * Rules-Requires-Root: no (routine-update)
+  * Trim trailing whitespace.
+  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+    Repository-Browse.
+  * Refer to specific version of license GPL-2+.
+  * Fix day-of-week for changelog entry 0.3.0.
+  * Cleanup installation of manpages
+
  -- Pranav Ballaney <ballaneypranav at gmail.com>  Fri, 12 Jun 2020 06:00:09 +0530
 
 bppsuite (2.4.1-1) unstable; urgency=medium
@@ -54,13 +71,13 @@ bppsuite (2.3.1-4) unstable; urgency=medium
 
 bppsuite (2.3.1-3) unstable; urgency=medium
 
-  * Fixed linkage issue in x32 arch (second attempt) 
+  * Fixed linkage issue in x32 arch (second attempt)
 
  -- Julien Dutheil <julien.dutheil at univ-montp2.fr>  Wed, 19 Jul 2017 20:56:28 +0200
 
 bppsuite (2.3.1-2) unstable; urgency=medium
 
-  * Fixed linkage issue in x32 arch. 
+  * Fixed linkage issue in x32 arch.
 
  -- Julien Dutheil <julien.dutheil at univ-montp2.fr>  Tue, 18 Jul 2017 21:47:05 +0200
 
@@ -158,5 +175,4 @@ bppsuite (0.3.0) unstable; urgency=low
 
   * Initial release
 
- -- Julien Dutheil <jdutheil at birc.au.dk>  Fri, 25 Sep 2008 14:28:21 +0200
-
+ -- Julien Dutheil <jdutheil at birc.au.dk>  Thu, 25 Sep 2008 14:28:21 +0200


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -4,15 +4,16 @@ Uploaders: Julien Dutheil <julien.dutheil at univ-montp2.fr>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 13),
                cmake,
                texinfo,
                libbpp-phyl-dev (>= 2.4.0),
                libbpp-popgen-dev (>= 2.4.0)
-Standards-Version: 4.2.0
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/bppsuite
 Vcs-Git: https://salsa.debian.org/med-team/bppsuite.git
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
+Rules-Requires-Root: no
 
 Package: bppsuite
 Architecture: any


=====================================
debian/copyright
=====================================
@@ -141,7 +141,7 @@ License: CeCILL
  .
  The purpose of the Agreement is the grant by the Licensor to the
  Licensee of a non-exclusive, transferable and worldwide license for the
- Software as set forth in Article 5 hereinafter for the whole term of the 
+ Software as set forth in Article 5 hereinafter for the whole term of the
  protection granted by the rights over said Software.
  .
  .
@@ -161,7 +161,7 @@ License: CeCILL
  characteristics of the Software, to the limited warranty, and to the
  fact that its use is restricted to experienced users has been provided
  to the Licensee prior to its acceptance as set forth in Article 3.1
- hereinabove, and the Licensee hereby acknowledges that it has read and 
+ hereinabove, and the Licensee hereby acknowledges that it has read and
  understood it.
  .
  .
@@ -409,7 +409,7 @@ License: CeCILL
  9.3 The Licensee acknowledges that the Software is supplied "as is" by
  the Licensor without any other express or tacit warranty, other than
  that provided for in Article 9.2 and, in particular, without any warranty
- as to its commercial value, its secured, safe, innovative or relevant 
+ as to its commercial value, its secured, safe, innovative or relevant
  nature.
  .
  Specifically, the Licensor does not warrant that the Software is free
@@ -524,7 +524,7 @@ License: GPL-2+
     it under the terms of the GNU General Public License as published by
     the Free Software Foundation; either version 2 of the License, or
     (at your option) any later version.
- . 
+ .
     This package is distributed in the hope that it will be useful,
     but WITHOUT ANY WARRANTY; without even the implied warranty of
     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
@@ -535,4 +535,4 @@ License: GPL-2+
     Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
  .
  On Debian systems, the complete text of the GNU General
- Public License can be found in `/usr/share/common-licenses/GPL'.
+ Public License can be found in `/usr/share/common-licenses/GPL-2'.


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/BioPP/bppsuite/issues
+Bug-Submit: https://github.com/BioPP/bppsuite/issues/new
 Registry:
  - Name: OMICtools
    Entry: OMICS_15696
@@ -5,3 +7,5 @@ Registry:
    Entry: NA
  - Name: SciCrunch
    Entry: NA
+Repository: https://github.com/BioPP/bppsuite.git
+Repository-Browse: https://github.com/BioPP/bppsuite



View it on GitLab: https://salsa.debian.org/med-team/bppsuite/-/compare/06f67230abd4a3d953fc4f561fb3e97c8d1961d5...c596cdd826b0d2afef62c53541ea9a60a5def6aa

-- 
View it on GitLab: https://salsa.debian.org/med-team/bppsuite/-/compare/06f67230abd4a3d953fc4f561fb3e97c8d1961d5...c596cdd826b0d2afef62c53541ea9a60a5def6aa
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