[med-svn] [Git][med-team/biocore-ntnu-ncls][master] 4 commits: Fixed testing

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / biocore-ntnu-ncls


Commits:
250c93ca by Steffen Möller at 2020-06-14T00:36:34+02:00
Fixed testing

- - - - -
ef9774f8 by Steffen Möller at 2020-06-14T01:10:56+02:00
Removing cython-generated files from tarball

- - - - -
451ee762 by Steffen Möller at 2020-06-14T01:11:29+02:00
New upstream version 0.0+git20200225.f9894b0+ds
- - - - -
4ec9436e by Steffen Möller at 2020-06-14T01:11:29+02:00
Update upstream source from tag 'upstream/0.0+git20200225.f9894b0+ds'

Update to upstream version '0.0+git20200225.f9894b0+ds'
with Debian dir aa16996612f3916500ef8886acdffa8eff67fe86
- - - - -


6 changed files:

- debian/copyright
- debian/rules
- debian/watch
- − ncls/src/fncls.c
- − ncls/src/ncls.c
- − ncls/src/ncls32.c


Changes:

=====================================
debian/copyright
=====================================
@@ -1,6 +1,10 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: NCLS
 Source: https://github.com/biocore-ntnu/ncls
+Files-Excluded:
+ ncls/src/fncls.c
+ ncls/src/ncls.c
+ ncls/src/ncls32.c
 
 Files: *
 Copyright: 2019 Endre Bakken Stovner


=====================================
debian/rules
=====================================
@@ -2,9 +2,6 @@
 export DH_VERBOSE = 1
 
 export PYBUILD_NAME=ncls
-#export PYBUILD_DISABLE=test  # not quite ready
-#export PYBUILD_TEST_ARGS= -p no:cacheprovider -p no:stepwise -k 'not S3 and not rnaseq and not fusion and not srnaseq and not chipseq and not install_required and not devel and not template and not hla and not combo'
-
 export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
 %:
@@ -12,17 +9,9 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
 override_dh_auto_clean:
 	dh_auto_clean
-	rm -rf ncls.egg-info/
+	rm -rf ncls.egg-info/ .pytest_cache
 	for cfilebak in `find . -name "*.c.bak"` ; do \
 	    cfile=`dirname $${cfilebak}`/`basename $${pyx} .bak` ; \
 	    mv $${cfilebak} $${cfile} ; \
 	done
-
-override_dh_auto_build:
-	for pyx in `find . -name "*.pyx"` ; do \
-	    cfile=`dirname $${pyx}`/`basename $${pyx} .pyx`.c ; \
-	    mv $${cfile} $${cfile}.bak ; \
-	done
-
-override_dh_auto_test:
-	PYTHONPATH=$(CURDIR) dh_auto_test
+	rm -f ncls/src/fncls.c ncls/src/ncls.c ncls/src/ncls32.c


=====================================
debian/watch
=====================================
@@ -1,5 +1,5 @@
 version=4
 
-opts="mode=git,pretty=0.0+git%cd.%h" \
+opts="mode=git,pretty=0.0+git%cd.%h+ds" \
   https://github.com/biocore-ntnu/ncls HEAD
 


=====================================
ncls/src/fncls.c deleted
=====================================
The diff for this file was not included because it is too large.

=====================================
ncls/src/ncls.c deleted
=====================================
The diff for this file was not included because it is too large.

=====================================
ncls/src/ncls32.c deleted
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/compare/dbb8cf29269dbc215f20c803fab855a6ece744f8...4ec9436e0b58531107cf740d3968bec68e9dd40e

-- 
View it on GitLab: https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/compare/dbb8cf29269dbc215f20c803fab855a6ece744f8...4ec9436e0b58531107cf740d3968bec68e9dd40e
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