[med-svn] [Git][med-team/fieldbioinformatics][upstream] New upstream version 1.1.3

[Malihe Asemani]

Malihe Asemani pushed to branch upstream at Debian Med / fieldbioinformatics


Commits:
1e1fac61 by Malihe Asemani at 2020-06-16T20:55:53+04:30
New upstream version 1.1.3
- - - - -


30 changed files:

- .gitignore
- + .travis.yml
- + CHANGELOG
- − HISTORY
- − INSTALL
- README.md
- + ansible
- − ansible/README
- − ansible/conda.yml
- − ansible/generate_user_passwords.py
- − ansible/prepare_laptop.yml
- artic/align_trim.py
- + artic/align_trim_n.py
- + artic/align_trim_unit_test.py
- + artic/conftest.py
- artic/demultiplex.py
- artic/align_trim_fasta.py → artic/deprecated/align_trim_fasta.py
- artic/checkdir.py → artic/deprecated/checkdir.py
- artic/collatestats.py → artic/deprecated/collatestats.py
- artic/collect_quals.py → artic/deprecated/collect_quals.py
- artic/collect_times.py → artic/deprecated/collect_times.py
- artic/combineruns.py → artic/deprecated/combineruns.py
- artic/convertscheme.py → artic/deprecated/convertscheme.py
- artic/copyunprocessedfiles.py → artic/deprecated/copyunprocessedfiles.py
- artic/countreads.py → artic/deprecated/countreads.py
- artic/cov.py → artic/deprecated/cov.py
- artic/coverages.py → artic/deprecated/coverages.py
- artic/covplot.R → artic/deprecated/covplot.R
- artic/extract_seqs.py → artic/deprecated/extract_seqs.py
- artic/fast5_to_consensus → artic/deprecated/fast5_to_consensus


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/fieldbioinformatics/-/commit/1e1fac61181e844fee2997802009d00a86bbbd1a

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