[med-svn] [Git][med-team/pairtools][master] 2 commits: Include d/upstream/metadata

[Antoni Villalonga]

Antoni Villalonga pushed to branch master at Debian Med / pairtools


Commits:
4997f0f9 by Antoni Villalonga at 2020-06-20T02:45:11+02:00
Include d/upstream/metadata

- - - - -
749e2f0c by Antoni Villalonga at 2020-06-20T02:45:11+02:00
New -examples package

- - - - -


5 changed files:

- + debian/README.test
- debian/control
- + debian/python3-pairtools-examples.install
- + debian/python3-pairtools.docs
- + debian/upstream/metadata


Changes:

=====================================
debian/README.test
=====================================
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+     apt install python3-pairtools-examples
+     cd /usr/share/doc/python3-pairtools/examples/tests && nosetests3
+
+in order to confirm its integrity.


=====================================
debian/control
=====================================
@@ -58,3 +58,24 @@ Description: Process sequencing data from a Hi-C experiment (debug build)
    - Generate extensive statistics of Hi-C datasets
    - Select Hi-C pairs given flexibly defined criteria
    - Restore .sam alignments from Hi-C pairs
+
+Package: python3-pairtools-examples
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+Enhances: python3-pairtools
+Description: Process sequencing data from a Hi-C experiment (examples)
+ Simple and fast command-line framework to process sequencing data from a Hi-C
+ experiment.
+ .
+ Process pair-end sequence alignments and perform the following operations:
+ .
+   - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
+     sequences of Hi-C DNA molecules
+   - Sort .pairs files for downstream analyses
+   - Detect, tag and remove PCR/optical duplicates
+   - Generate extensive statistics of Hi-C datasets
+   - Select Hi-C pairs given flexibly defined criteria
+   - Restore .sam alignments from Hi-C pairs
+ .
+ This package contains some examples


=====================================
debian/python3-pairtools-examples.install
=====================================
@@ -0,0 +1,2 @@
+tests/*.py   usr/share/doc/python3-pairtools/examples/tests/
+tests/data/* usr/share/doc/python3-pairtools/examples/tests/data


=====================================
debian/python3-pairtools.docs
=====================================
@@ -0,0 +1 @@
+debian/README.test


=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1,7 @@
+Repository-Browse: https://github.com/mirnylab/pairtools
+Repository: https://github.com/mirnylab/pairtools.git
+Bug-Database: https://github.com/mirnylab/pairtools/issues
+Bug-Submit: https://github.com/mirnylab/pairtools/issues/new
+Registry:
+  - Name: conda:bioconda
+    Entry: pairtools



View it on GitLab: https://salsa.debian.org/med-team/pairtools/-/compare/fe90c3d0c60319c3ce5394ab5a478af6e63fd861...749e2f0c5d806b9cfcf3a61a31c18d87b07976be

-- 
View it on GitLab: https://salsa.debian.org/med-team/pairtools/-/compare/fe90c3d0c60319c3ce5394ab5a478af6e63fd861...749e2f0c5d806b9cfcf3a61a31c18d87b07976be
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