[med-svn] [Git][med-team/pairtools][master] Autopkgtests

[Antoni Villalonga]

Antoni Villalonga pushed to branch master at Debian Med / pairtools


Commits:
fe90c3d0 by Antoni Villalonga at 2020-06-20T01:51:46+02:00
Autopkgtests

- - - - -


4 changed files:

- debian/patches/series
- + debian/patches/tests-to-python3
- + debian/tests/control
- + debian/tests/upstream-tests


Changes:

=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
 makefile
 fix-spelling
+tests-to-python3


=====================================
debian/patches/tests-to-python3
=====================================
@@ -0,0 +1,186 @@
+Description: Tests to Python3
+Author: Antoni Villalonga i Noceras <antoni at friki.cat>
+Last-Update: Wed, 18 Jun 2020 22:31:00 +0200
+
+--- a/tests/test_dedup.py
++++ b/tests/test_dedup.py
+@@ -22,7 +22,7 @@
+ def setup_func():
+     try:
+         subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'dedup',
+@@ -38,7 +38,7 @@
+              ],
+             )
+         subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'dedup',
+--- a/tests/test_filterbycov.py
++++ b/tests/test_filterbycov.py
+@@ -40,7 +40,7 @@
+     try:
+         for p in params:
+             subprocess.check_output(
+-                ['python',
++                ['python3',
+                  '-m',
+                  'pairtools',
+                  'filterbycov',
+--- a/tests/test_flip.py
++++ b/tests/test_flip.py
+@@ -12,7 +12,7 @@
+ def test_flip():
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'flip',
+--- a/tests/test_markasdup.py
++++ b/tests/test_markasdup.py
+@@ -10,7 +10,7 @@
+     mock_pairsam_path = os.path.join(testdir, 'data', 'mock.pairsam')
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'markasdup',
+--- a/tests/test_merge.py
++++ b/tests/test_merge.py
+@@ -17,7 +17,7 @@
+ def setup_func():
+     try:
+         subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'sort',
+@@ -28,7 +28,7 @@
+             )
+ 
+         subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'sort',
+@@ -49,7 +49,7 @@
+ def test_mock_pairsam():
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'merge',
+--- a/tests/test_parse.py
++++ b/tests/test_parse.py
+@@ -172,7 +172,7 @@
+     mock_chroms_path = os.path.join(testdir, 'data', 'mock.chrom.sizes')
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'parse',
+--- a/tests/test_select.py
++++ b/tests/test_select.py
+@@ -12,7 +12,7 @@
+ def test_preserve():
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'select',
+@@ -35,7 +35,7 @@
+ def test_equal():
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'select',
+@@ -62,7 +62,7 @@
+ def test_csv():
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'select',
+@@ -89,7 +89,7 @@
+ def test_wildcard():
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'select',
+@@ -116,7 +116,7 @@
+ def test_regex():
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'select',
+@@ -142,7 +142,7 @@
+ def test_chrom_subset():
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'select',
+--- a/tests/test_sort.py
++++ b/tests/test_sort.py
+@@ -10,7 +10,7 @@
+     mock_pairsam_path = os.path.join(testdir, 'data', 'mock.pairsam')
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'sort',
+--- a/tests/test_split.py
++++ b/tests/test_split.py
+@@ -16,7 +16,7 @@
+ def setup_func():
+     try:
+         subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'split',
+--- a/tests/test_stats.py
++++ b/tests/test_stats.py
+@@ -10,7 +10,7 @@
+     mock_pairsam_path = os.path.join(testdir, 'data', 'mock.pairsam')
+     try:
+         result = subprocess.check_output(
+-            ['python',
++            ['python3',
+              '-m',
+              'pairtools',
+              'stats',


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: upstream-tests
+Depends: python3-pairtools
+Restrictions: allow-stderr, breaks-testbed


=====================================
debian/tests/upstream-tests
=====================================
@@ -0,0 +1,9 @@
+#!/usr/bin/env bash
+
+set -ev
+
+rm -rf pairtools
+
+nosetests3
+
+echo ALL PASS



View it on GitLab: https://salsa.debian.org/med-team/pairtools/-/commit/fe90c3d0c60319c3ce5394ab5a478af6e63fd861

-- 
View it on GitLab: https://salsa.debian.org/med-team/pairtools/-/commit/fe90c3d0c60319c3ce5394ab5a478af6e63fd861
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