Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
711da4b4 by Andreas Tille at 2020-06-25T13:43:00+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,64 +1,70 @@
-Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
+Last-Update: Thu, 25 Jun 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 188 | {imaging,covid-19} |
- orthanc | 94 | {imaging,covid-19,practice} |
- gdcm | 45 | {imaging-dev} |
+ dcmtk | 189 | {imaging,covid-19} |
+ orthanc | 95 | {imaging,covid-19,practice} |
+ gdcm | 46 | {imaging-dev} |
orthanc-wsi | 43 | {practice,laboratory,covid-19,oncology,his,imaging} |
- htsjdk | 32 | {bio-dev} |
+ htsjdk | 33 | {bio-dev} |
+ dicomscope | 26 | {imaging} |
dcm2niix | 25 | {imaging} |
- dicomscope | 25 | {imaging} |
- dicom3tools | 24 | {imaging} |
+ dicom3tools | 25 | {imaging} |
gdcm | 21 | {covid-19,imaging} |
- ngs-sdk | 19 | {bio-dev} |
+ ngs-sdk | 20 | {bio-dev} |
gnumed-server | 16 | {practice,covid-19} |
gdcm | 13 | {imaging-dev} |
- invesalius | 12 | {imaging} |
+ invesalius | 13 | {imaging} |
minc-tools | 12 | {imaging} |
adun.app | 11 | {bio} |
insighttoolkit4 | 11 | {imaging-dev} |
- jebl2 | 10 | {bio-dev} |
- pixelmed | 10 | {imaging} |
+ jebl2 | 11 | {bio-dev} |
+ pixelmed | 11 | {imaging} |
+ vsearch | 11 | {bio,covid-19} |
plastimatch | 10 | {imaging} |
- psychopy | 10 | {psychology} |
- vsearch | 10 | {bio,covid-19} |
biosig4c++ | 9 | {physics,imaging} |
dicompyler | 9 | {oncology} |
king | 9 | {imaging,typesetting} |
- ngs-sdk | 9 | {bio-dev} |
+ openslide | 9 | {imaging} |
+ psychopy | 9 | {psychology} |
vtk-dicom | 9 | {imaging} |
librg-utils-perl | 8 | {bio} |
melting | 8 | {bio,cloud} |
+ ngs-sdk | 8 | {bio-dev} |
obitools | 8 | {bio} |
- openslide | 8 | {imaging} |
stacks | 8 | {bio} |
+ ea-utils | 7 | {bio} |
fastlink | 7 | {bio,cloud} |
king-probe | 7 | {bio} |
ncbi-seg | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
seqsero | 7 | {bio} |
+ treeview | 7 | {bio,bio-phylogeny} |
biojava-live | 6 | {bio-dev} |
biomaj3-cli | 6 | {cloud} |
- ea-utils | 6 | {bio} |
+ jaligner | 6 | {bio} |
+ lagan | 6 | {bio} |
+ libdivsufsort | 6 | {bio-dev} |
+ maqview | 6 | {bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
phyutility | 6 | {bio,cloud} |
sibsim4 | 6 | {bio,cloud} |
sigma-align | 6 | {bio,bio-phylogeny,cloud} |
spread-phy | 6 | {bio,bio-phylogeny} |
staden | 6 | {bio} |
- treeview | 6 | {bio,bio-phylogeny} |
+ anfo | 5 | {bio,cloud} |
biomaj3-daemon | 5 | {bio} |
brig | 5 | {bio} |
ecopcr | 5 | {bio} |
+ getdata | 5 | {bio} |
ghmm | 5 | {bio} |
- jaligner | 5 | {bio} |
- lagan | 5 | {bio} |
libminc | 5 | {imaging-dev} |
- maqview | 5 | {bio} |
+ mhap | 5 | {bio-ngs,bio} |
microbegps | 5 | {bio} |
mipe | 5 | {bio,cloud} |
+ mlv-smile | 5 | {bio,cloud} |
neobio | 5 | {bio,cloud} |
+ paraclu | 5 | {bio,cloud} |
piler | 5 | {bio} |
predictprotein | 5 | {bio} |
pymia | 5 | {imaging-dev} |
@@ -69,13 +75,13 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
saint | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
seqmagick | 5 | {bio,covid-19} |
+ sickle | 5 | {bio} |
snap-aligner | 5 | {bio} |
squizz | 5 | {cloud,bio} |
tnseq-transit | 5 | {bio,covid-19} |
transtermhp | 5 | {bio} |
alter-sequence-alignment | 4 | {bio} |
ampliconnoise | 4 | {cloud,bio} |
- anfo | 4 | {bio,cloud} |
arden | 4 | {cloud,bio} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
@@ -85,23 +91,18 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
embassy-domalign | 4 | {bio,cloud} |
embassy-domsearch | 4 | {bio,cloud} |
gatb-core | 4 | {bio} |
- getdata | 4 | {bio} |
hinge | 4 | {bio} |
ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
- libdivsufsort | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
maffilter | 4 | {bio} |
mauve-aligner | 4 | {bio} |
- mhap | 4 | {bio-ngs,bio} |
- mlv-smile | 4 | {bio,cloud} |
mrs | 4 | {bio} |
murasaki | 4 | {bio} |
nutsqlite | 4 | {tools} |
openslide | 4 | {imaging-dev} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
- paraclu | 4 | {bio,cloud} |
perm | 4 | {cloud,bio} |
phast | 4 | {bio} |
placnet | 4 | {bio} |
@@ -113,9 +114,9 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
rdp-classifier | 4 | {bio} |
scythe | 4 | {bio} |
segemehl | 4 | {bio} |
- sickle | 4 | {bio} |
surankco | 4 | {bio} |
tracetuner | 4 | {bio} |
+ zalign | 4 | {bio,cloud} |
assemblytics | 3 | {bio} |
baitfisher | 3 | {bio} |
bandage | 3 | {bio} |
@@ -148,6 +149,7 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
mptp | 3 | {bio} |
nanook | 3 | {covid-19,bio} |
ngs-sdk | 3 | {bio-dev} |
+ pal2nal | 3 | {bio} |
patman | 3 | {bio} |
phipack | 3 | {bio} |
phybin | 3 | {bio} |
@@ -173,7 +175,6 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
sweed | 3 | {bio} |
tvc | 3 | {bio} |
yaha | 3 | {bio} |
- zalign | 3 | {bio,cloud} |
biosig4c++ | 2 | {imaging-dev,physics} |
blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
@@ -182,8 +183,9 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
emboss-explorer | 2 | {bio} |
libctapimkt | 2 | {practice} |
libsbml | 2 | {bio-dev} |
+ multiqc | 2 | {covid-19,bio} |
+ ncbi-vdb | 2 | {bio-dev} |
oscar | 2 | {data,tools,practice} |
- pal2nal | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
relion | 2 | {bio} |
@@ -195,18 +197,20 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {cloud,bio} |
gatb-core | 1 | {bio-dev} |
+ htscodecs | 1 | {bio-dev,covid-19} |
libchado-perl | 1 | {bio-dev} |
+ libmaus2 | 1 | {covid-19,bio-dev} |
libmialm | 1 | {imaging-dev} |
libvistaio | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
- multiqc | 1 | {covid-19,bio} |
murasaki | 1 | {bio} |
- ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
+ pbcopper | 1 | {bio-dev} |
python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
q2templates | 1 | {bio} |
relion | 1 | {bio} |
+ samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
simpleitk | 1 | {imaging-dev} |
thesias | 1 | {covid-19,bio} |
@@ -214,7 +218,6 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
acedb | 0 | {cloud,bio} |
- augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -223,7 +226,6 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
camp | 0 | {imaging-dev} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {bio-dev,covid-19} |
kma | 0 | {bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
@@ -243,7 +245,6 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
@@ -260,14 +261,12 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
- pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
quicktree | 0 | {covid-19,bio,bio-phylogeny} |
relion | 0 | {bio} |
relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
- samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skesa | 0 | {bio} |
@@ -280,6 +279,7 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
+ augur | -1 | {covid-19,bio} |
bustools | -1 | {bio,covid-19} |
mssstest | -1 | {tools} |
pycoqc | -1 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/711da4b42d74c8d23189a38b59fdf11bf936083e
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/711da4b42d74c8d23189a38b59fdf11bf936083e
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