[med-svn] [Git][med-team/bbmap][master] 5 commits: Fix calcmem.sh issue

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bbmap


Commits:
ff8fb382 by Andreas Tille at 2020-06-30T22:01:08+02:00
Fix calcmem.sh issue

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f4fc1067 by Andreas Tille at 2020-06-30T22:01:40+02:00
New upstream version 38.86+dfsg
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1ea57ff7 by Andreas Tille at 2020-06-30T22:01:40+02:00
routine-update: New upstream version

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17c8d0c1 by Andreas Tille at 2020-06-30T22:01:48+02:00
Update upstream source from tag 'upstream/38.86+dfsg'

Update to upstream version '38.86+dfsg'
with Debian dir 9fe0d09c8d67f0937c684e898fb2dfbb15678f05
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332baa1a by Andreas Tille at 2020-06-30T22:01:48+02:00
routine-update: debhelper-compat 13

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22 changed files:

- README.md
- applyvariants.sh
- + bitbucket-pipelines.yml
- + build.xml
- callvariants.sh
- + current/aligner/FlatAligner2.java
- current/assemble/Tadpole1.java
- current/consensus/BaseGraph.java
- + current/hmm/HMMSearchLine.java
- + current/hmm/HMMSearchReport.java
- current/icecream/IceCreamFinder.java
- current/icecream/IceCreamMaker.java
- + current/icecream/PBHeader.java
- + current/icecream/ReformatPacBio.java
- + current/icecream/ZMW.java
- + current/icecream/ZMWStreamer.java
- + current/jasper/KmerPosition.java
- + current/jasper/KmerPosition3.java
- current/jgi/BBDuk.java
- current/jgi/RandomGenome.java
- current/jgi/ReformatReads.java
- current/shared/Shared.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/6259fe6d6fa813e17a36978b37cd1854e9752a20...332baa1aac14a2a0fe8ada1b192d60379cd56acf

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/6259fe6d6fa813e17a36978b37cd1854e9752a20...332baa1aac14a2a0fe8ada1b192d60379cd56acf
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