Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
785dbbad by Andreas Tille at 2020-03-04T13:44:16+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,46 +1,46 @@
-Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
+Last-Update: Wed, 04 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
dcmtk | 175 | {imaging} |
- orthanc | 96 | {practice,imaging} |
- gdcm | 44 | {imaging-dev} |
- orthanc-wsi | 38 | {oncology,laboratory,imaging,his,practice} |
+ orthanc | 97 | {practice,imaging} |
+ gdcm | 45 | {imaging-dev} |
+ orthanc-wsi | 39 | {oncology,laboratory,imaging,his,practice} |
dcm2niix | 37 | {imaging} |
- amide | 34 | {imaging} |
+ amide | 35 | {imaging} |
dicomscope | 27 | {imaging} |
- medicalterms | 26 | {tools} |
- dicom3tools | 25 | {imaging} |
- htsjdk | 23 | {bio-dev} |
+ medicalterms | 27 | {tools} |
+ dicom3tools | 26 | {imaging} |
+ htsjdk | 22 | {bio-dev} |
gdcm | 17 | {imaging} |
- gnumed-server | 16 | {practice} |
+ gnumed-server | 17 | {practice} |
+ invesalius | 13 | {imaging} |
+ pixelmed | 13 | {imaging} |
adun.app | 12 | {bio} |
- invesalius | 12 | {imaging} |
minc-tools | 12 | {imaging} |
ngs-sdk | 12 | {bio-dev} |
- pixelmed | 12 | {imaging} |
- king | 10 | {imaging,typesetting} |
+ gdcm | 9 | {imaging-dev} |
insighttoolkit4 | 9 | {imaging-dev} |
jebl2 | 9 | {bio-dev} |
+ king | 9 | {imaging,typesetting} |
mia | 9 | {imaging} |
tree-puzzle | 9 | {bio,bio-phylogeny,cloud} |
vtk-dicom | 9 | {imaging} |
biojava-live | 8 | {bio-dev} |
- gdcm | 8 | {imaging-dev} |
+ ngs-sdk | 8 | {bio-dev} |
obitools | 8 | {bio} |
plastimatch | 8 | {imaging} |
psychopy | 8 | {psychology} |
biosig4c++ | 7 | {imaging,physics} |
- librg-utils-perl | 7 | {bio} |
ncbi-entrez-direct | 7 | {bio} |
arden | 6 | {cloud,bio} |
cgview | 6 | {bio} |
cluster3 | 6 | {bio} |
fastlink | 6 | {cloud,bio} |
+ librg-utils-perl | 6 | {bio} |
maqview | 6 | {bio} |
melting | 6 | {bio,cloud} |
mipe | 6 | {bio,cloud} |
- ngs-sdk | 6 | {bio-dev} |
openslide | 6 | {imaging} |
orthanc-webviewer | 6 | {imaging} |
dazzdb | 5 | {bio} |
@@ -50,11 +50,14 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
ncbi-seg | 5 | {bio} |
norsp | 5 | {bio} |
openslide | 5 | {imaging-dev} |
+ pymia | 5 | {imaging-dev} |
radiant | 5 | {bio} |
sibsim4 | 5 | {cloud,bio} |
sigma-align | 5 | {bio-phylogeny,bio,cloud} |
+ sortmerna | 5 | {bio} |
anfo | 4 | {cloud,bio} |
biomaj3-cli | 4 | {cloud} |
+ bio-tradis | 4 | {bio-dev,bio} |
embassy-domalign | 4 | {bio,cloud} |
embassy-domsearch | 4 | {bio,cloud} |
estscan | 4 | {bio} |
@@ -65,26 +68,25 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
king-probe | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
mapsembler2 | 4 | {bio,cloud} |
+ mrs | 4 | {bio} |
neobio | 4 | {cloud,bio} |
orthanc-dicomweb | 4 | {imaging} |
paml | 4 | {bio} |
phyutility | 4 | {bio,cloud} |
piler | 4 | {bio} |
- pymia | 4 | {imaging-dev} |
relion | 4 | {bio} |
- sortmerna | 4 | {bio} |
squizz | 4 | {bio,cloud} |
staden | 4 | {bio} |
tracetuner | 4 | {bio} |
transtermhp | 4 | {bio} |
treeview | 4 | {bio-phylogeny,bio} |
+ velvetoptimiser | 4 | {bio} |
zalign | 4 | {cloud,bio} |
abacas | 3 | {bio} |
ampliconnoise | 3 | {cloud,bio} |
assemblytics | 3 | {bio} |
bandage | 3 | {bio} |
biomaj3-daemon | 3 | {bio} |
- bio-tradis | 3 | {bio-dev,bio} |
bppsuite | 3 | {bio} |
brig | 3 | {bio} |
codonw | 3 | {bio} |
@@ -94,14 +96,11 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
fitgcp | 3 | {bio,cloud} |
freecontact | 3 | {bio,cloud} |
getdata | 3 | {bio} |
- ghmm | 3 | {bio} |
indelible | 3 | {bio} |
jellyfish1 | 3 | {bio} |
libminc | 3 | {imaging-dev} |
libsbml | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
- mlv-smile | 3 | {cloud,bio} |
- mrs | 3 | {bio} |
nutsqlite | 3 | {tools} |
paraclu | 3 | {cloud,bio} |
parsnp | 3 | {bio} |
@@ -109,7 +108,6 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
phast | 3 | {bio} |
plasmidseeker | 3 | {bio} |
predictprotein | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
proalign | 3 | {bio-phylogeny,bio} |
probabel | 3 | {bio,cloud} |
pscan-tfbs | 3 | {bio} |
@@ -123,7 +121,6 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
seqtools | 3 | {bio} |
spread-phy | 3 | {bio-phylogeny,bio} |
tvc | 3 | {bio} |
- velvetoptimiser | 3 | {bio} |
yaha | 3 | {bio} |
acedb | 2 | {bio,cloud} |
alter-sequence-alignment | 2 | {bio} |
@@ -139,9 +136,9 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
cufflinks | 2 | {bio,cloud} |
delly | 2 | {bio} |
diamond-aligner | 2 | {bio} |
- elastix | 2 | {imaging} |
elph | 2 | {bio} |
gatb-core | 2 | {bio} |
+ ghmm | 2 | {bio} |
harvest-tools | 2 | {bio} |
libgff | 2 | {bio-dev} |
libncl | 2 | {bio} |
@@ -149,12 +146,14 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
lucy | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
microbegps | 2 | {bio} |
+ mlv-smile | 2 | {cloud,bio} |
murasaki | 2 | {bio} |
orthanc-mysql | 2 | {imaging} |
orthanc-postgresql | 2 | {imaging} |
pbdagcon | 2 | {bio} |
pilon | 2 | {bio} |
placnet | 2 | {bio} |
+ prime-phylo | 2 | {cloud,bio} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
@@ -188,6 +187,7 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
dindel | 1 | {bio} |
dwgsim | 1 | {bio} |
edflib | 1 | {imaging-dev} |
+ elastix | 1 | {imaging} |
embassy-phylip | 1 | {cloud,bio} |
emmax | 1 | {bio} |
fasta3 | 1 | {bio} |
@@ -201,6 +201,7 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
kma | 1 | {bio} |
kmerresistance | 1 | {bio} |
lamarc | 1 | {bio} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libhmsbeagle | 1 | {bio-dev} |
libpal-java | 1 | {bio-dev} |
@@ -221,7 +222,6 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
pilercr | 1 | {bio} |
poretools | 1 | {bio} |
prottest | 1 | {bio-phylogeny,bio} |
- relion | 1 | {bio} |
repeatmasker-recon | 1 | {bio} |
roguenarok | 1 | {bio} |
runcircos-gui | 1 | {bio} |
@@ -260,7 +260,6 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
- libbio-mage-utils-perl | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
libbpp-phyl | 0 | {bio-dev} |
@@ -320,5 +319,5 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
-(348 rows)
+(347 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,96 +1,98 @@
-Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
+Last-Update: Wed, 04 Mar 2020 13:42:03 +0000
- source | version | upstream_version | uploaders | Last uploader | Last uploaded
--------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
- andi | 0.12 | 0.13 | Fabian Klötzl | Andreas Tille | 2018-10-27 17:50:30+00
- artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
- atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
- baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
- beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
- biobambam2 | 2.0.153 | 2.0.156+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
- biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00
- biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
- biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
- biomaj3-download | 3.1.0 | 3.1.2 | Olivier Sallou | Olivier Sallou | 2019-11-12 13:19:24+00
- biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
- biosig4c++ | 1.9.5 | 2.0.1 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
- bowtie2 | 2.3.5.1 | 2.4.1 | Alexandre Mestiashvili,Andreas Tille | Michael R. Crusoe | 2019-12-19 16:34:16+00
- charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00
- dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00
- ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
- elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00
- epigrass | 2.5.0 | 2.6.0 | Andreas Tille,Thorsten Alteholz | Andreas Tille | 2019-09-13 19:48:50+00
- falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00
- fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
- gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
- gdcm | 3.0.4 | 3.0.5 | Gert Wollny,Sébastien Jodogne,Steve M. Robbins | Gert Wollny | 2019-11-07 11:49:02+00
- hdmf | 1.5.4 | 1.6.0 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
- htsjdk | 2.18.2 | 2.21.2 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00
- hyphy | 2.5.1 | 2.5.4 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
- igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
- igv | 2.4.17 | 2.8.0 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
- imagej | 1.52r | 1.52t | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
- ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
- jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
- kallisto | 0.46.1 | 0.46.2 | Andreas Tille | Michael R. Crusoe | 2019-12-27 07:19:20+00
- kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20190618.0ac41a0 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
- king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
- libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
- libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
- libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
- libics | 1.6.3 | 1.6.4 | Andreas Tille | Andreas Tille | 2019-08-01 12:39:13+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200302.2594964 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libmaus2 | 2.0.698 | 2.0.704 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
- libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
- libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
- metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
- mmseqs2 | 10-6d92c | 11-e1a1c | Shayan Doust | Andreas Tille | 2020-02-11 22:38:56+00
- mothur | 1.42.1 | 1.43.0 | Andreas Tille,Steffen Moeller,Tomasz Buchert | Andreas Tille | 2019-08-01 19:09:05+00
- mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
- ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
- ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
- ngs-sdk | 2.10.2 | 2.10.4 | Andreas Tille,Olivier Sallou,Vincent Danjean | Michael R. Crusoe | 2020-02-17 15:36:45+00
- pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
- pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
- pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00
- picard-tools | 2.18.25 | 2.22.0 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
- plink2 | 2.00~a3-200217 | 200225 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
- prokka | 1.14.5 | 1.14.6 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-04 11:00:31+00
- psychopy | 2020.1.1 | 2020.1.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-02-24 08:55:42+00
- pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
- python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
- python-bids-validator | 1.2.4 | 1.4.2 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
- python-cgecore | 1.5.2 | 1.5.3 | Andreas Tille | Steffen Moeller | 2020-01-06 17:05:53+00
- python-cobra | 0.14.2 | 0.17.1 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
- python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
- python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200227.663a4d9 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
- python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
- python-treetime | 0.7.1 | 0.7.4 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00
- q2cli | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-16 10:20:08+00
- q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
- q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
- q2-feature-classifier | 2019.4.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00
- q2-feature-table | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:49:21+00
- q2-metadata | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-02-03 08:42:28+00
- q2-quality-filter | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:49+00
- q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
- q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00
- qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
- relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
- resfinder-db | 0.0+git20191001.149209d | 0.0+git20200213.2a8dd7f | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
- salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
- seaview | 4.7 | 5.0.1 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
- shapeit4 | 4.1 | 4.1.3 | Dylan Aïssi | Dylan Aïssi | 2019-12-18 22:06:47+00
- simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00
- simpleitk | 1.0.1 | 1.2.0 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:06:08+00
- spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
- sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
- sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
- t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
- unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
- vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
- xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(88 rows)
+ source | version | upstream_version | uploaders | Last uploader | Last uploaded
+-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+-----------------------+------------------------
+ andi | 0.12 | 0.13 | Fabian Klötzl | Andreas Tille | 2018-10-27 17:50:30+00
+ artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
+ atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
+ baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
+ bali-phy | 3.4.1 | 3.5.0 | Benjamin Redelings | Gianfranco Costamagna | 2019-07-08 07:49:13+00
+ beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
+ biobambam2 | 2.0.153 | 2.0.156+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
+ biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00
+ biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
+ biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
+ biomaj3-download | 3.1.0 | 3.1.2 | Olivier Sallou | Olivier Sallou | 2019-11-12 13:19:24+00
+ biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
+ biosig4c++ | 1.9.5 | 2.0.1 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
+ bowtie2 | 2.3.5.1 | 2.4.1 | Alexandre Mestiashvili,Andreas Tille | Michael R. Crusoe | 2019-12-19 16:34:16+00
+ charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00
+ dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00
+ ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
+ elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00
+ epigrass | 2.5.0 | 2.6.0 | Andreas Tille,Thorsten Alteholz | Andreas Tille | 2019-09-13 19:48:50+00
+ falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00
+ fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
+ gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
+ gdcm | 3.0.4 | 3.0.5 | Gert Wollny,Sébastien Jodogne,Steve M. Robbins | Gert Wollny | 2019-11-07 11:49:02+00
+ hdmf | 1.5.4 | 1.6.0 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
+ htseq | 0.11.2 | 0.11.3 | Andreas Tille,Diane Trout | Andreas Tille | 2019-10-08 15:19:28+00
+ htsjdk | 2.18.2 | 2.21.2 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00
+ hyphy | 2.5.1 | 2.5.5 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
+ igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
+ igv | 2.4.17 | 2.8.0 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
+ imagej | 1.52r | 1.52t | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
+ ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
+ jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
+ kallisto | 0.46.1 | 0.46.2 | Andreas Tille | Michael R. Crusoe | 2019-12-27 07:19:20+00
+ kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20190618.0ac41a0 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
+ king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
+ libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
+ libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
+ libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
+ libics | 1.6.3 | 1.6.4 | Andreas Tille | Andreas Tille | 2019-08-01 12:39:13+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200302.2594964 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libmaus2 | 2.0.698 | 2.0.705 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
+ libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
+ libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
+ metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
+ mmseqs2 | 10-6d92c | 11-e1a1c | Shayan Doust | Andreas Tille | 2020-02-11 22:38:56+00
+ mothur | 1.42.1 | 1.43.0 | Andreas Tille,Steffen Moeller,Tomasz Buchert | Andreas Tille | 2019-08-01 19:09:05+00
+ mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
+ ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
+ ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
+ ngs-sdk | 2.10.2 | 2.10.4 | Andreas Tille,Olivier Sallou,Vincent Danjean | Michael R. Crusoe | 2020-02-17 15:36:45+00
+ pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
+ pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
+ pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00
+ picard-tools | 2.18.25 | 2.22.0 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
+ plink2 | 2.00~a3-200217 | 200225 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ prokka | 1.14.5 | 1.14.6 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-04 11:00:31+00
+ psychopy | 2020.1.1 | 2020.1.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-02-24 08:55:42+00
+ pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
+ python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
+ python-bids-validator | 1.2.4 | 1.4.2 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
+ python-cgecore | 1.5.2 | 1.5.3 | Andreas Tille | Steffen Moeller | 2020-01-06 17:05:53+00
+ python-cobra | 0.14.2 | 0.17.1 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
+ python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
+ python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200227.663a4d9 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
+ python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
+ python-treetime | 0.7.1 | 0.7.4 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00
+ q2cli | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-16 10:20:08+00
+ q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
+ q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
+ q2-feature-classifier | 2019.4.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00
+ q2-feature-table | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:49:21+00
+ q2-metadata | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-02-03 08:42:28+00
+ q2-quality-filter | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:49+00
+ q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
+ q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00
+ qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
+ relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
+ resfinder-db | 0.0+git20191001.149209d | 0.0+git20200213.2a8dd7f | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
+ salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
+ seaview | 4.7 | 5.0.1 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
+ shapeit4 | 4.1 | 4.1.3 | Dylan Aïssi | Dylan Aïssi | 2019-12-18 22:06:47+00
+ simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00
+ simpleitk | 1.0.1 | 1.2.0 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:06:08+00
+ spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
+ sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
+ sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
+ t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
+ unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
+ vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
+ xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
+(90 rows)
source | id | severity | title
@@ -234,6 +236,8 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
prokka | 924128 | normal | prokka: creates world writable directory tree /var/lib/prokka/*
psychopy | 730810 | normal | psychopy: Movie support suboptimal
psychopy | 829424 | normal | psychopy: ioHub uses inappropriate PID file location
+ psychopy | 953052 | important | psychopy: python2 dependencies
+ psychopy | 953053 | important | psychopy: missing python3 dependencies
pynast | 937488 | normal | pynast: Python2 removal in sid/bullseye
pynast | 948081 | serious | pynast build depends on and recommends the removed blast2 transitional package
python-biom-format | 820060 | normal | python-biom-format: broken on big-endian architectures
@@ -285,5 +289,5 @@ Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(190 rows)
+(192 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/785dbbadbb77dacf9ed985dc92a8f5c688288284
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/785dbbadbb77dacf9ed985dc92a8f5c688288284
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