[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Sat Mar 7 01:45:37 GMT 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
58f4fb3d by Andreas Tille at 2020-03-07T01:45:33+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Fri, 06 Mar 2020 13:42:03 +0000
+Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
 
  Source                        | Vote   | Tasks                                      |                                 Tags                                 
 -------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------


=====================================
outdated_med-packages.txt
=====================================
@@ -1,111 +1,109 @@
-Last-Update: Fri, 06 Mar 2020 13:42:03 +0000
+Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
 
- source                        |             version             |        upstream_version         |                       uploaders                                             | Last uploader         |     Last uploaded      
--------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+-----------------------+------------------------
- andi                          | 0.12                            | 0.13                            | Fabian Klötzl                                                              | Andreas Tille         | 2018-10-27 17:50:30+00
- artemis                       | 17.0.1                          | 18.1.0                          | Andreas Tille                                                               | Andreas Tille         | 2019-02-08 11:19:24+00
- atropos                       | 1.1.24                          | 2.0.0-alpha.4                   | Andreas Tille                                                               | Steffen Moeller       | 2019-11-30 12:19:31+00
- baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                                              | Andreas Tille         | 2018-09-24 13:04:18+00
- bali-phy                      | 3.4.1                           | 3.5.0                           | Benjamin Redelings                                                          | Gianfranco Costamagna | 2019-07-08 07:49:13+00
- beast2-mcmc                   | 2.6.0                           | 2.6.2                           | Andreas Tille,Olivier Sallou                                                | Andreas Tille         | 2019-07-31 13:08:02+00
- biobambam2                    | 2.0.153                         | 2.0.156+ds                      | Andreas Tille                                                               | Andreas Tille         | 2020-02-05 13:20:41+00
- biojava-live                  | 1.7.1                           | 1.9.3                           | Andreas Tille,Olivier Sallou,Steffen Moeller                                | Andreas Tille         | 2018-11-12 15:49:23+00
- biomaj3                       | 3.1.14                          | 3.1.16                          | Olivier Sallou                                                              | Olivier Sallou        | 2020-02-08 18:22:42+00
- biomaj3-core                  | 3.0.19                          | 3.0.22                          | Olivier Sallou                                                              | Olivier Sallou        | 2019-11-12 11:20:23+00
- biomaj3-download              | 3.1.0                           | 3.1.2                           | Olivier Sallou                                                              | Olivier Sallou        | 2019-11-12 13:19:24+00
- biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                              | Olivier Sallou        | 2019-11-12 11:20:38+00
- biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille         | 2020-03-02 08:38:37+00
- bowtie2                       | 2.3.5.1                         | 2.4.1                           | Alexandre Mestiashvili,Andreas Tille                                        | Michael R. Crusoe     | 2019-12-19 16:34:16+00
- charls                        | 2.0.0                           | 2.1.0                           | Andreas Tille                                                               | Andreas Tille         | 2019-01-10 20:10:56+00
- cwltool                       | 2.0.20200224214940              | 2.0.20200303141624              | Michael R. Crusoe                                                           | Michael R. Crusoe     | 2020-02-26 12:07:54+00
- dcm2niix                      | 1.0.20181125                    | 1.0.20190902                    | Ghislain Antony Vaillant                                                    | Andreas Tille         | 2019-01-30 10:04:52+00
- ea-utils                      | 1.1.2                           | 1.04.807                        | Andreas Tille,Tim Booth                                                     | Andreas Tille         | 2018-04-26 21:48:01+00
- elastix                       | 4.9.0                           | 5.0.0                           | Gert Wollny,Steve M. Robbins                                                | Andreas Tille         | 2019-01-15 11:50:11+00
- epigrass                      | 2.5.0                           | 2.6.0                           | Andreas Tille,Thorsten Alteholz                                             | Andreas Tille         | 2019-09-13 19:48:50+00
- falcon                        | 1.8.8                           | 2.1.4                           | Afif Elghraoui                                                              | Afif Elghraoui        | 2017-12-16 08:49:13+00
- fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                                     | Amul Shah             | 2019-02-28 14:12:19+00
- gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200118.1dc23ff       | Andreas Tille,Nadiya Sitdykova                                              | Michael R. Crusoe     | 2020-02-17 14:52:30+00
- gdcm                          | 3.0.4                           | 3.0.5                           | Gert Wollny,Sébastien Jodogne,Steve M. Robbins                             | Gert Wollny           | 2019-11-07 11:49:02+00
- hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                          | Yaroslav Halchenko    | 2020-02-03 03:01:25+00
- htsjdk                        | 2.18.2                          | 2.21.2                          | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean                 | Andreas Tille         | 2019-03-01 22:19:40+00
- hyphy                         | 2.5.1                           | 2.5.5                           | Andreas Tille                                                               | Andreas Tille         | 2020-01-07 21:19:50+00
- igdiscover                    | 0.11                            | 0.12.2                          | Steffen Moeller                                                             | Andreas Tille         | 2019-09-06 07:04:02+00
- igv                           | 2.4.17                          | 2.8.0                           | Andreas Tille,Olivier Sallou                                                | Andreas Tille         | 2019-01-30 15:11:57+00
- imagej                        | 1.52r                           | 1.52t                           | David Miguel Susano Pinto                                                   | Andreas Tille         | 2019-12-04 14:55:11+00
- ismrmrd                       | 1.4.0                           | 1.4.1                           | Ghislain Antony Vaillant                                                    | Andreas Tille         | 2019-01-26 07:49:20+00
- jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                               | Andreas Tille         | 2018-07-05 12:05:57+00
- kallisto                      | 0.46.1                          | 0.46.2                          | Andreas Tille                                                               | Michael R. Crusoe     | 2019-12-27 07:19:20+00
- kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20190618.0ac41a0       | Andreas Tille                                                               | Andreas Tille         | 2019-02-14 13:26:09+00
- king-probe                    | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant                                | Andreas Tille         | 2018-07-16 07:34:48+00
- libbioparser-dev              | 2.0.1                           | 2.1.2                           | Andreas Tille                                                               | Andreas Tille         | 2019-07-15 13:35:45+00
- libedlib                      | 1.2.4                           | 1.2.6                           | Andreas Tille                                                               | Andreas Tille         | 2019-08-19 00:34:56+00
- libgclib                      | 0.11.4                          | 0.11.7                          | Andreas Tille,Michael R. Crusoe,Steffen Moeller                             | Michael R. Crusoe     | 2020-02-14 13:04:26+00
- libics                        | 1.6.3                           | 1.6.4                           | Andreas Tille                                                               | Andreas Tille         | 2019-08-01 12:39:13+00
- libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200302.2594964         | Andreas Tille                                                               | Andreas Tille         | 2018-05-25 21:49:43+00
- libmaus2                      | 2.0.698                         | 2.0.705                         | Andreas Tille,Steffen Moeller                                               | Andreas Tille         | 2020-02-05 10:04:12+00
- libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                                      | Andreas Tille         | 2018-09-26 08:35:30+00
- libundead                     | 1.0.10                          | 1.1.1                           | Andreas Tille                                                               | Andreas Tille         | 2019-09-13 21:06:10+00
- metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                               | Andreas Tille         | 2019-11-08 07:19:11+00
- mmseqs2                       | 10-6d92c                        | 11-e1a1c                        | Shayan Doust                                                                | Andreas Tille         | 2020-02-11 22:38:56+00
- mothur                        | 1.42.1                          | 1.43.0                          | Andreas Tille,Steffen Moeller,Tomasz Buchert                                | Andreas Tille         | 2019-08-01 19:09:05+00
- mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                                | Andreas Tille         | 2018-06-11 07:19:31+00
- ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                                  | Aaron M. Ucko         | 2020-02-17 01:50:53+00
- ncbi-entrez-direct            | 12.0.20190816                   | 13.5.20200304                   | Aaron M. Ucko                                                               | Aaron M. Ucko         | 2020-02-03 03:53:53+00
- ncbi-vdb                      | 2.10.3                          | 2.10.4                          | Andreas Tille                                                               | Andreas Tille         | 2020-02-24 21:12:17+00
- ngs-sdk                       | 2.10.2                          | 2.10.4                          | Andreas Tille,Olivier Sallou,Vincent Danjean                                | Michael R. Crusoe     | 2020-02-17 15:36:45+00
- pbcopper                      | 1.3.0                           | 1.4.0                           | Andreas Tille                                                               | Andreas Tille         | 2020-01-29 08:51:15+00
- pbgenomicconsensus            | 2.3.2                           | 2.3.3                           | Andreas Tille                                                               | Liubov Chuprikova     | 2019-04-07 15:33:36+00
- pbseqlib                      | 5.3.3                           | 5.3.4                           | Andreas Tille                                                               | Andreas Tille         | 2020-01-29 15:04:33+00
- picard-tools                  | 2.18.25                         | 2.22.0                          | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille         | 2019-02-04 09:20:37+00
- plink2                        | 2.00~a3-200217                  | 200225                          | Dylan Aïssi                                                                | Dylan Aïssi          | 2020-02-19 06:19:18+00
- prokka                        | 1.14.5                          | 1.14.6                          | Andreas Tille,Michael R. Crusoe                                             | Michael R. Crusoe     | 2019-12-04 11:00:31+00
- psychopy                      | 2020.1.1                        | 2020.1.2                        | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille         | 2020-02-24 08:55:42+00
- pydicom                       | 1.4.1                           | 1.4.2                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille         | 2020-01-23 12:34:53+00
- python-avro                   | 1.9.1                           | 1.9.2                           | Afif Elghraoui                                                              | Andreas Tille         | 2019-12-18 08:41:55+00
- python-bids-validator         | 1.2.4                           | 1.4.2                           | Yaroslav Halchenko                                                          | Yaroslav Halchenko    | 2019-08-17 19:00:11+00
- python-cgecore                | 1.5.2                           | 1.5.3                           | Andreas Tille                                                               | Steffen Moeller       | 2020-01-06 17:05:53+00
- python-cobra                  | 0.14.2                          | 0.17.1                          | Afif Elghraoui                                                              | Liubov Chuprikova     | 2019-03-02 06:49:44+00
- python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                                               | Andreas Tille         | 2019-12-06 16:51:43+00
- python-pbcommand              | 1.1.1+git20191122.ec024c3       | 1.1.1+git20200227.663a4d9       | Andreas Tille                                                               | Andreas Tille         | 2019-12-19 08:42:03+00
- python-pymummer               | 0.10.3                          | 0.11.0                          | Afif Elghraoui                                                              | Andreas Tille         | 2019-01-07 09:06:07+00
- python-schema-salad           | 5.0.20200220195218              | 5.0.20200302192450              | Michael R. Crusoe                                                           | Michael R. Crusoe     | 2020-02-27 19:19:53+00
- python-treetime               | 0.7.1                           | 0.7.4                           | Andreas Tille                                                               | Steffen Moeller       | 2020-01-18 20:52:48+00
- q2cli                         | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova     | 2019-12-16 10:20:08+00
- q2-cutadapt                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova     | 2020-01-26 07:34:32+00
- q2-demux                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova     | 2020-01-26 07:34:40+00
- q2-feature-classifier         | 2019.4.0                        | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova     | 2019-11-11 10:00:33+00
- q2-feature-table              | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova     | 2020-01-26 07:49:21+00
- q2-metadata                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Andreas Tille         | 2020-02-03 08:42:28+00
- q2-quality-filter             | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova     | 2020-01-26 07:34:49+00
- q2templates                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova     | 2019-11-14 22:00:17+00
- q2-types                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova     | 2019-12-23 20:39:42+00
- qiime                         | 2019.10.0                       | 2020.2.0                        | Andreas Tille,Liubov Chuprikova,Steffen Moeller                             | Liubov Chuprikova     | 2019-12-16 09:51:27+00
- relion                        | 1.4                             | 3.0.8                           | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher   | Andreas Tille         | 2018-06-14 12:49:40+00
- resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200213.2a8dd7f         | Andreas Tille                                                               | Andreas Tille         | 2019-11-16 23:00:12+00
- salmon                        | 0.12.0                          | 1.1.0                           | Kevin Murray,Michael R. Crusoe                                              | Andreas Tille         | 2018-12-13 19:05:56+00
- seaview                       | 4.7                             | 5.0.1                           | Andreas Tille,Charles Plessy                                                | Andreas Tille         | 2018-05-09 13:43:40+00
- simka                         | 1.5.1                           | 1.5.2                           | Shayan Doust                                                                | Andreas Tille         | 2020-01-12 18:49:47+00
- simpleitk                     | 1.0.1                           | 1.2.0                           | Ghislain Antony Vaillant                                                    | Andreas Tille         | 2019-01-30 10:06:08+00
- spades                        | 3.13.1                          | 3.14.0                          | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss     | Andreas Tille         | 2019-11-22 10:05:04+00
- spoa                          | 3.0.1                           | 3.0.2                           | Andreas Tille                                                               | Andreas Tille         | 2019-09-16 11:53:05+00
- sra-sdk                       | 2.9.3                           | 2.10.4                          | Andreas Tille,Charles Plessy                                                | Steffen Moeller       | 2018-10-23 20:40:02+00
- sumatra                       | 1.0.31                          | 1.0.34                          | Andreas Tille,Tim Booth                                                     | Andreas Tille         | 2018-10-16 10:06:33+00
- t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                               | Andreas Tille         | 2019-02-15 07:57:10+00
- unanimity                     | 3.3.0                           | 4.2.0                           | Afif Elghraoui,Andreas Tille                                                | Adrian Bunk           | 2019-02-06 07:34:42+00
- vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                     | Andreas Tille         | 2019-12-17 10:07:09+00
- xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                      | Andreas Tille         | 2019-01-25 18:23:59+00
-(92 rows)
+ source                        |             version             |        upstream_version         |                       uploaders                                             | Last uploader        |     Last uploaded      
+-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
+ andi                          | 0.12                            | 0.13                            | Fabian Klötzl                                                              | Andreas Tille        | 2018-10-27 17:50:30+00
+ artemis                       | 17.0.1                          | 18.1.0                          | Andreas Tille                                                               | Andreas Tille        | 2019-02-08 11:19:24+00
+ atropos                       | 1.1.24                          | 2.0.0-alpha.4                   | Andreas Tille                                                               | Steffen Moeller      | 2019-11-30 12:19:31+00
+ baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                                              | Andreas Tille        | 2018-09-24 13:04:18+00
+ beast2-mcmc                   | 2.6.0                           | 2.6.2                           | Andreas Tille,Olivier Sallou                                                | Andreas Tille        | 2019-07-31 13:08:02+00
+ biobambam2                    | 2.0.153                         | 2.0.156+ds                      | Andreas Tille                                                               | Andreas Tille        | 2020-02-05 13:20:41+00
+ biojava-live                  | 1.7.1                           | 1.9.3                           | Andreas Tille,Olivier Sallou,Steffen Moeller                                | Andreas Tille        | 2018-11-12 15:49:23+00
+ biomaj3                       | 3.1.14                          | 3.1.16                          | Olivier Sallou                                                              | Olivier Sallou       | 2020-02-08 18:22:42+00
+ biomaj3-core                  | 3.0.19                          | 3.0.22                          | Olivier Sallou                                                              | Olivier Sallou       | 2019-11-12 11:20:23+00
+ biomaj3-download              | 3.1.0                           | 3.1.2                           | Olivier Sallou                                                              | Olivier Sallou       | 2019-11-12 13:19:24+00
+ biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                              | Olivier Sallou       | 2019-11-12 11:20:38+00
+ biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille        | 2020-03-02 08:38:37+00
+ bowtie2                       | 2.3.5.1                         | 2.4.1                           | Alexandre Mestiashvili,Andreas Tille                                        | Michael R. Crusoe    | 2019-12-19 16:34:16+00
+ charls                        | 2.0.0                           | 2.1.0                           | Andreas Tille                                                               | Andreas Tille        | 2019-01-10 20:10:56+00
+ cwltool                       | 2.0.20200224214940              | 2.0.20200303141624              | Michael R. Crusoe                                                           | Michael R. Crusoe    | 2020-02-26 12:07:54+00
+ dcm2niix                      | 1.0.20181125                    | 1.0.20190902                    | Ghislain Antony Vaillant                                                    | Andreas Tille        | 2019-01-30 10:04:52+00
+ ea-utils                      | 1.1.2                           | 1.04.807                        | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2018-04-26 21:48:01+00
+ elastix                       | 4.9.0                           | 5.0.0                           | Gert Wollny,Steve M. Robbins                                                | Andreas Tille        | 2019-01-15 11:50:11+00
+ epigrass                      | 2.5.0                           | 2.6.0                           | Andreas Tille,Thorsten Alteholz                                             | Andreas Tille        | 2019-09-13 19:48:50+00
+ falcon                        | 1.8.8                           | 2.1.4                           | Afif Elghraoui                                                              | Afif Elghraoui       | 2017-12-16 08:49:13+00
+ fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                                     | Amul Shah            | 2019-02-28 14:12:19+00
+ gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200118.1dc23ff       | Andreas Tille,Nadiya Sitdykova                                              | Michael R. Crusoe    | 2020-02-17 14:52:30+00
+ gdcm                          | 3.0.4                           | 3.0.5                           | Gert Wollny,Sébastien Jodogne,Steve M. Robbins                             | Gert Wollny          | 2019-11-07 11:49:02+00
+ hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                          | Yaroslav Halchenko   | 2020-02-03 03:01:25+00
+ htsjdk                        | 2.18.2                          | 2.21.2                          | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean                 | Andreas Tille        | 2019-03-01 22:19:40+00
+ hyphy                         | 2.5.1                           | 2.5.5                           | Andreas Tille                                                               | Andreas Tille        | 2020-01-07 21:19:50+00
+ igdiscover                    | 0.11                            | 0.12.2                          | Steffen Moeller                                                             | Andreas Tille        | 2019-09-06 07:04:02+00
+ igv                           | 2.4.17                          | 2.8.0                           | Andreas Tille,Olivier Sallou                                                | Andreas Tille        | 2019-01-30 15:11:57+00
+ imagej                        | 1.52r                           | 1.52t                           | David Miguel Susano Pinto                                                   | Andreas Tille        | 2019-12-04 14:55:11+00
+ ismrmrd                       | 1.4.0                           | 1.4.1                           | Ghislain Antony Vaillant                                                    | Andreas Tille        | 2019-01-26 07:49:20+00
+ jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                               | Andreas Tille        | 2018-07-05 12:05:57+00
+ kallisto                      | 0.46.1                          | 0.46.2                          | Andreas Tille                                                               | Michael R. Crusoe    | 2019-12-27 07:19:20+00
+ kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20190618.0ac41a0       | Andreas Tille                                                               | Andreas Tille        | 2019-02-14 13:26:09+00
+ king-probe                    | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant                                | Andreas Tille        | 2018-07-16 07:34:48+00
+ libbioparser-dev              | 2.0.1                           | 2.1.2                           | Andreas Tille                                                               | Andreas Tille        | 2019-07-15 13:35:45+00
+ libedlib                      | 1.2.4                           | 1.2.6                           | Andreas Tille                                                               | Andreas Tille        | 2019-08-19 00:34:56+00
+ libgclib                      | 0.11.4                          | 0.11.7                          | Andreas Tille,Michael R. Crusoe,Steffen Moeller                             | Michael R. Crusoe    | 2020-02-14 13:04:26+00
+ libics                        | 1.6.3                           | 1.6.4                           | Andreas Tille                                                               | Andreas Tille        | 2019-08-01 12:39:13+00
+ libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200302.2594964         | Andreas Tille                                                               | Andreas Tille        | 2018-05-25 21:49:43+00
+ libmaus2                      | 2.0.698                         | 2.0.705                         | Andreas Tille,Steffen Moeller                                               | Andreas Tille        | 2020-02-05 10:04:12+00
+ libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                                      | Andreas Tille        | 2018-09-26 08:35:30+00
+ libundead                     | 1.0.10                          | 1.1.1                           | Andreas Tille                                                               | Andreas Tille        | 2019-09-13 21:06:10+00
+ metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                               | Andreas Tille        | 2019-11-08 07:19:11+00
+ mmseqs2                       | 10-6d92c                        | 11-e1a1c                        | Shayan Doust                                                                | Andreas Tille        | 2020-02-11 22:38:56+00
+ mothur                        | 1.42.1                          | 1.43.0                          | Andreas Tille,Steffen Moeller,Tomasz Buchert                                | Andreas Tille        | 2019-08-01 19:09:05+00
+ mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                                | Andreas Tille        | 2018-06-11 07:19:31+00
+ ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                                  | Aaron M. Ucko        | 2020-02-17 01:50:53+00
+ ncbi-entrez-direct            | 12.0.20190816                   | 13.5.20200304                   | Aaron M. Ucko                                                               | Aaron M. Ucko        | 2020-02-03 03:53:53+00
+ ncbi-vdb                      | 2.10.3                          | 2.10.4                          | Andreas Tille                                                               | Andreas Tille        | 2020-02-24 21:12:17+00
+ ngs-sdk                       | 2.10.2                          | 2.10.4                          | Andreas Tille,Olivier Sallou,Vincent Danjean                                | Michael R. Crusoe    | 2020-02-17 15:36:45+00
+ pbcopper                      | 1.3.0                           | 1.4.0                           | Andreas Tille                                                               | Andreas Tille        | 2020-01-29 08:51:15+00
+ pbgenomicconsensus            | 2.3.2                           | 2.3.3                           | Andreas Tille                                                               | Liubov Chuprikova    | 2019-04-07 15:33:36+00
+ pbseqlib                      | 5.3.3                           | 5.3.4                           | Andreas Tille                                                               | Andreas Tille        | 2020-01-29 15:04:33+00
+ picard-tools                  | 2.18.25                         | 2.22.0                          | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille        | 2019-02-04 09:20:37+00
+ plink2                        | 2.00~a3-200217                  | 200225                          | Dylan Aïssi                                                                | Dylan Aïssi         | 2020-02-19 06:19:18+00
+ prokka                        | 1.14.5                          | 1.14.6                          | Andreas Tille,Michael R. Crusoe                                             | Michael R. Crusoe    | 2019-12-04 11:00:31+00
+ psychopy                      | 2020.1.1                        | 2020.1.2                        | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille        | 2020-02-24 08:55:42+00
+ pydicom                       | 1.4.1                           | 1.4.2                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille        | 2020-01-23 12:34:53+00
+ python-avro                   | 1.9.1                           | 1.9.2                           | Afif Elghraoui                                                              | Andreas Tille        | 2019-12-18 08:41:55+00
+ python-bids-validator         | 1.2.4                           | 1.4.2                           | Yaroslav Halchenko                                                          | Yaroslav Halchenko   | 2019-08-17 19:00:11+00
+ python-cgecore                | 1.5.2                           | 1.5.3                           | Andreas Tille                                                               | Steffen Moeller      | 2020-01-06 17:05:53+00
+ python-cobra                  | 0.14.2                          | 0.17.1                          | Afif Elghraoui                                                              | Liubov Chuprikova    | 2019-03-02 06:49:44+00
+ python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                                               | Andreas Tille        | 2019-12-06 16:51:43+00
+ python-pbcommand              | 1.1.1+git20191122.ec024c3       | 1.1.1+git20200227.663a4d9       | Andreas Tille                                                               | Andreas Tille        | 2019-12-19 08:42:03+00
+ python-pymummer               | 0.10.3                          | 0.11.0                          | Afif Elghraoui                                                              | Andreas Tille        | 2019-01-07 09:06:07+00
+ python-schema-salad           | 5.0.20200220195218              | 5.0.20200302192450              | Michael R. Crusoe                                                           | Michael R. Crusoe    | 2020-02-27 19:19:53+00
+ python-treetime               | 0.7.1                           | 0.7.4                           | Andreas Tille                                                               | Steffen Moeller      | 2020-01-18 20:52:48+00
+ q2cli                         | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2019-12-16 10:20:08+00
+ q2-cutadapt                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2020-01-26 07:34:32+00
+ q2-demux                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2020-01-26 07:34:40+00
+ q2-feature-classifier         | 2019.4.0                        | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2019-11-11 10:00:33+00
+ q2-feature-table              | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2020-01-26 07:49:21+00
+ q2-metadata                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Andreas Tille        | 2020-02-03 08:42:28+00
+ q2-quality-filter             | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2020-01-26 07:34:49+00
+ q2templates                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2019-11-14 22:00:17+00
+ q2-types                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2019-12-23 20:39:42+00
+ qiime                         | 2019.10.0                       | 2020.2.0                        | Andreas Tille,Liubov Chuprikova,Steffen Moeller                             | Liubov Chuprikova    | 2019-12-16 09:51:27+00
+ relion                        | 1.4                             | 3.0.8                           | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher   | Andreas Tille        | 2018-06-14 12:49:40+00
+ resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200213.2a8dd7f         | Andreas Tille                                                               | Andreas Tille        | 2019-11-16 23:00:12+00
+ salmon                        | 0.12.0                          | 1.1.0                           | Kevin Murray,Michael R. Crusoe                                              | Andreas Tille        | 2018-12-13 19:05:56+00
+ seaview                       | 4.7                             | 5.0.1                           | Andreas Tille,Charles Plessy                                                | Andreas Tille        | 2018-05-09 13:43:40+00
+ simka                         | 1.5.1                           | 1.5.2                           | Shayan Doust                                                                | Andreas Tille        | 2020-01-12 18:49:47+00
+ simpleitk                     | 1.0.1                           | 1.2.0                           | Ghislain Antony Vaillant                                                    | Andreas Tille        | 2019-01-30 10:06:08+00
+ spades                        | 3.13.1                          | 3.14.0                          | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss     | Andreas Tille        | 2019-11-22 10:05:04+00
+ spoa                          | 3.0.1                           | 3.0.2                           | Andreas Tille                                                               | Andreas Tille        | 2019-09-16 11:53:05+00
+ sra-sdk                       | 2.9.3                           | 2.10.4                          | Andreas Tille,Charles Plessy                                                | Steffen Moeller      | 2018-10-23 20:40:02+00
+ sumatra                       | 1.0.31                          | 1.0.34                          | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2018-10-16 10:06:33+00
+ t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                               | Andreas Tille        | 2019-02-15 07:57:10+00
+ unanimity                     | 3.3.0                           | 4.2.0                           | Afif Elghraoui,Andreas Tille                                                | Adrian Bunk          | 2019-02-06 07:34:42+00
+ vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2019-12-17 10:07:09+00
+ xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                      | Andreas Tille        | 2019-01-25 18:23:59+00
+(91 rows)
 
 
- source                        |   id   | severity  |                                                                                                                                                                                                                           title                                                                                                                                                                                                                           
--------------------------------+--------+-----------+-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+ source                        |   id   | severity  |                                                                                           title                                                                                           
+-------------------------------+--------+-----------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  abyss                         | 920282 | important | abyss fails to build on hurd - googletest EXPECT_DEATH
  amide                         | 901677 | normal    | amide: Window is too wide and not resizable
  arb                           | 916406 | important | libarb-dev: Missing symbols in static libraries
  arb                           | 918015 | wishlist  | [INTL:sv] Swedish strings for arb debconf
  arb                           | 926017 | minor     | arb: Typo in package description: "website links unreachable, description outdated"
  ariba                         | 951944 | serious   | ariba: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.7 returned exit code 13
- bali-phy                      | 951991 | serious   | bali-phy: FTBFS: detected.hpp:52:7: error: invalid use of incomplete type ‘struct nlohmann::detail::detector<nlohmann::detail::nonesuch, void, nlohmann::detail::to_json_function, nlohmann::adl_serializer<ptree, void>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>&, ptree>’
  ball                          | 936183 | normal    | ball: Python2 removal in sid/bullseye
  bamtools                      | 865130 | important | reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz'
  bcbio                         | 928076 | important | bcbio: Workflows not ready for non-developers to depend on.
@@ -294,5 +292,5 @@ Last-Update: Fri, 06 Mar 2020 13:42:03 +0000
  xmedcon                       | 671828 | normal    | xmedcon: Cannot open file with YBR photometric interpretation
  xmedcon                       | 779707 | normal    | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
  xmedcon                       | 924017 | normal    | desktop entry
-(195 rows)
+(194 rows)
 



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/58f4fb3d06f46be9d8ebefec1f62b0890b1e9372

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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/58f4fb3d06f46be9d8ebefec1f62b0890b1e9372
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