Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d59c6d76 by Andreas Tille at 2020-03-07T13:44:13+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,41 +1,41 @@
-Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
+Last-Update: Sat, 07 Mar 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
dcmtk | 178 | {imaging} |
- orthanc | 97 | {practice,imaging} |
+ orthanc | 98 | {practice,imaging} |
gdcm | 47 | {imaging-dev} |
dcm2niix | 40 | {imaging} |
orthanc-wsi | 38 | {oncology,laboratory,imaging,his,practice} |
- amide | 37 | {imaging} |
- dicomscope | 30 | {imaging} |
+ amide | 35 | {imaging} |
+ dicomscope | 31 | {imaging} |
dicom3tools | 29 | {imaging} |
medicalterms | 26 | {tools} |
htsjdk | 25 | {bio-dev} |
- gdcm | 20 | {imaging} |
+ gdcm | 19 | {imaging} |
gnumed-server | 18 | {practice} |
pixelmed | 16 | {imaging} |
- invesalius | 15 | {imaging} |
+ invesalius | 14 | {imaging} |
king | 14 | {imaging,typesetting} |
ngs-sdk | 14 | {bio-dev} |
minc-tools | 13 | {imaging} |
adun.app | 12 | {bio} |
insighttoolkit4 | 11 | {imaging-dev} |
+ openslide | 11 | {imaging} |
vtk-dicom | 11 | {imaging} |
biosig4c++ | 10 | {imaging,physics} |
- jebl2 | 10 | {bio-dev} |
mia | 10 | {imaging} |
- openslide | 10 | {imaging} |
- tree-puzzle | 10 | {bio,bio-phylogeny,cloud} |
gdcm | 9 | {imaging-dev} |
+ jebl2 | 9 | {bio-dev} |
plastimatch | 9 | {imaging} |
+ tree-puzzle | 9 | {bio,bio-phylogeny,cloud} |
librg-utils-perl | 8 | {bio} |
- ncbi-entrez-direct | 8 | {bio} |
ngs-sdk | 8 | {bio-dev} |
biojava-live | 7 | {bio-dev} |
dicompyler | 7 | {oncology} |
fastlink | 7 | {cloud,bio} |
melting | 7 | {bio,cloud} |
+ ncbi-entrez-direct | 7 | {bio} |
obitools | 7 | {bio} |
psychopy | 7 | {psychology} |
sortmerna | 7 | {bio} |
@@ -52,6 +52,7 @@ Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
jaligner | 5 | {bio} |
king-probe | 5 | {bio} |
lagan | 5 | {bio} |
+ libsbml | 5 | {bio-dev} |
neobio | 5 | {cloud,bio} |
openslide | 5 | {imaging-dev} |
orthanc-webviewer | 5 | {imaging} |
@@ -80,7 +81,6 @@ Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
- libsbml | 4 | {bio-dev} |
mapsembler2 | 4 | {bio,cloud} |
mauve-aligner | 4 | {bio} |
paml | 4 | {bio} |
@@ -215,8 +215,8 @@ Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libhmsbeagle | 1 | {bio-dev} |
- libsmithwaterman | 1 | {bio-dev} |
libsmithwaterman | 1 | {bio} |
+ libsmithwaterman | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
maxflow | 1 | {imaging-dev} |
@@ -247,7 +247,6 @@ Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
sumaclust | 1 | {bio} |
surankco | 1 | {bio} |
thesias | 1 | {bio} |
- tnseq-transit | 1 | {bio} |
tree-puzzle | 1 | {cloud,bio-phylogeny,bio} |
varscan | 1 | {bio} |
volpack | 1 | {imaging-dev} |
@@ -317,6 +316,7 @@ Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
smrtanalysis | 0 | {bio} |
solvate | 0 | {bio} |
spaln | 0 | {bio} |
+ tnseq-transit | 0 | {bio} |
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
(347 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
+Last-Update: Sat, 07 Mar 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -29,7 +29,7 @@ Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
htsjdk | 2.18.2 | 2.21.2 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00
hyphy | 2.5.1 | 2.5.5 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
- igv | 2.4.17 | 2.8.0 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
+ igv | 2.4.17 | 2.8.1 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
imagej | 1.52r | 1.52t | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
@@ -40,7 +40,7 @@ Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
libics | 1.6.3 | 1.6.4 | Andreas Tille | Andreas Tille | 2019-08-01 12:39:13+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200302.2594964 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200303.26c9c1f | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
libmaus2 | 2.0.698 | 2.0.705 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
@@ -48,6 +48,7 @@ Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
mmseqs2 | 10-6d92c | 11-e1a1c | Shayan Doust | Andreas Tille | 2020-02-11 22:38:56+00
mothur | 1.42.1 | 1.43.0 | Andreas Tille,Steffen Moeller,Tomasz Buchert | Andreas Tille | 2019-08-01 19:09:05+00
mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
+ nanopolish | 0.11.3 | 0.12.0 | Andreas Tille | Steffen Moeller | 2019-12-22 12:49:21+00
ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
ncbi-entrez-direct | 12.0.20190816 | 13.5.20200304 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
@@ -58,7 +59,7 @@ Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
picard-tools | 2.18.25 | 2.22.0 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
plink2 | 2.00~a3-200217 | 200225 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
prokka | 1.14.5 | 1.14.6 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-04 11:00:31+00
- psychopy | 2020.1.1 | 2020.1.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-02-24 08:55:42+00
+ psychopy | 2020.1.1 | 2020.2.3 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-02-24 08:55:42+00
pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
python-bids-validator | 1.2.4 | 1.4.2 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
@@ -93,7 +94,7 @@ Last-Update: Sat, 07 Mar 2020 01:42:04 +0000
unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(91 rows)
+(92 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d59c6d76a76dcdfccff46ac548051f7d0acdc47a
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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d59c6d76a76dcdfccff46ac548051f7d0acdc47a
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