Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
c598411b by Andreas Tille at 2020-03-10T13:44:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,40 +1,43 @@
-Last-Update: Tue, 10 Mar 2020 01:42:03 +0000
+Last-Update: Tue, 10 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 181 | {imaging} |
+ dcmtk | 179 | {imaging} |
orthanc | 101 | {practice,imaging} |
gdcm | 48 | {imaging-dev} |
dcm2niix | 41 | {imaging} |
orthanc-wsi | 38 | {oncology,laboratory,imaging,his,practice} |
amide | 36 | {imaging} |
+ dicom3tools | 31 | {imaging} |
dicomscope | 31 | {imaging} |
- dicom3tools | 30 | {imaging} |
+ htsjdk | 27 | {bio-dev} |
medicalterms | 27 | {tools} |
- htsjdk | 26 | {bio-dev} |
- gdcm | 20 | {imaging} |
+ gdcm | 21 | {imaging} |
+ pixelmed | 18 | {imaging} |
gnumed-server | 17 | {practice} |
- pixelmed | 17 | {imaging} |
- king | 15 | {imaging,typesetting} |
- invesalius | 14 | {imaging} |
- minc-tools | 14 | {imaging} |
+ king | 16 | {imaging,typesetting} |
+ invesalius | 15 | {imaging} |
+ minc-tools | 15 | {imaging} |
ngs-sdk | 14 | {bio-dev} |
adun.app | 13 | {bio} |
- insighttoolkit4 | 12 | {imaging-dev} |
- openslide | 12 | {imaging} |
- vtk-dicom | 12 | {imaging} |
+ insighttoolkit4 | 13 | {imaging-dev} |
+ openslide | 13 | {imaging} |
+ vtk-dicom | 13 | {imaging} |
+ jebl2 | 11 | {bio-dev} |
+ mia | 11 | {imaging} |
biosig4c++ | 10 | {imaging,physics} |
- jebl2 | 10 | {bio-dev} |
- mia | 10 | {imaging} |
ngs-sdk | 10 | {bio-dev} |
+ plastimatch | 10 | {imaging} |
+ tree-puzzle | 10 | {bio,bio-phylogeny,cloud} |
+ biojava-live | 9 | {bio-dev} |
gdcm | 9 | {imaging-dev} |
librg-utils-perl | 9 | {bio} |
- plastimatch | 9 | {imaging} |
- tree-puzzle | 9 | {bio,bio-phylogeny,cloud} |
- biojava-live | 8 | {bio-dev} |
+ ncbi-entrez-direct | 9 | {bio} |
fastlink | 8 | {cloud,bio} |
melting | 8 | {bio,cloud} |
- ncbi-entrez-direct | 8 | {bio} |
+ ncbi-seg | 8 | {bio} |
+ norsp | 8 | {bio} |
+ psychopy | 8 | {psychology} |
sortmerna | 8 | {bio} |
staden | 8 | {bio} |
arden | 7 | {cloud,bio} |
@@ -42,23 +45,27 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000
dicompyler | 7 | {oncology} |
maqview | 7 | {bio} |
mipe | 7 | {bio,cloud} |
- ncbi-seg | 7 | {bio} |
- norsp | 7 | {bio} |
+ neobio | 7 | {cloud,bio} |
obitools | 7 | {bio} |
- psychopy | 7 | {psychology} |
+ radiant | 7 | {bio} |
+ sigma-align | 7 | {bio-phylogeny,bio,cloud} |
+ ampliconnoise | 6 | {cloud,bio} |
+ beast2-mcmc | 6 | {bio} |
jaligner | 6 | {bio} |
- neobio | 6 | {cloud,bio} |
+ libsbml | 6 | {bio-dev} |
phyutility | 6 | {bio,cloud} |
piler | 6 | {bio} |
- radiant | 6 | {bio} |
- sigma-align | 6 | {bio-phylogeny,bio,cloud} |
- ampliconnoise | 5 | {cloud,bio} |
+ rdp-readseq | 6 | {bio} |
+ sibsim4 | 6 | {cloud,bio} |
+ treeview | 6 | {bio-phylogeny,bio} |
+ zalign | 6 | {cloud,bio} |
anfo | 5 | {cloud,bio} |
biomaj3-cli | 5 | {cloud} |
bio-tradis | 5 | {bio-dev,bio} |
dazzdb | 5 | {bio} |
ea-utils | 5 | {bio} |
ecopcr | 5 | {bio} |
+ edtsurf | 5 | {bio} |
embassy-domainatrix | 5 | {cloud,bio} |
embassy-domalign | 5 | {bio,cloud} |
embassy-domsearch | 5 | {bio,cloud} |
@@ -68,28 +75,26 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000
idba | 5 | {bio,cloud} |
king-probe | 5 | {bio} |
lagan | 5 | {bio} |
- libsbml | 5 | {bio-dev} |
+ lucy | 5 | {bio} |
mauve-aligner | 5 | {bio} |
- openslide | 5 | {imaging-dev} |
orthanc-webviewer | 5 | {imaging} |
paml | 5 | {bio} |
+ paraclu | 5 | {cloud,bio} |
perm | 5 | {cloud,bio} |
predictprotein | 5 | {bio} |
+ prime-phylo | 5 | {cloud,bio} |
probabel | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
+ saint | 5 | {bio} |
salmon | 5 | {bio} |
- sibsim4 | 5 | {cloud,bio} |
squizz | 5 | {bio,cloud} |
- treeview | 5 | {bio-phylogeny,bio} |
- zalign | 5 | {cloud,bio} |
+ alter-sequence-alignment | 4 | {bio} |
assemblytics | 4 | {bio} |
- beast2-mcmc | 4 | {bio} |
bppsuite | 4 | {bio} |
brig | 4 | {bio} |
cluster3 | 4 | {bio} |
codonw | 4 | {bio} |
diamond-aligner | 4 | {bio} |
- edtsurf | 4 | {bio} |
elph | 4 | {bio} |
fitgcp | 4 | {bio,cloud} |
harvest-tools | 4 | {bio} |
@@ -99,28 +104,29 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000
libdivsufsort | 4 | {bio-dev} |
libgff | 4 | {bio-dev} |
libncl | 4 | {bio} |
- lucy | 4 | {bio} |
mapsembler2 | 4 | {bio,cloud} |
microbegps | 4 | {bio} |
+ mlv-smile | 4 | {cloud,bio} |
murasaki | 4 | {bio} |
- paraclu | 4 | {cloud,bio} |
+ openslide | 4 | {imaging-dev} |
parsnp | 4 | {bio} |
phast | 4 | {bio} |
placnet | 4 | {bio} |
plasmidseeker | 4 | {bio} |
- prime-phylo | 4 | {cloud,bio} |
+ poretools | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
+ pscan-chip | 4 | {bio} |
pscan-tfbs | 4 | {bio} |
- rdp-readseq | 4 | {bio} |
relion | 4 | {bio} |
- saint | 4 | {bio} |
+ scythe | 4 | {bio} |
seer | 4 | {bio} |
seqsero | 4 | {bio} |
+ sickle | 4 | {bio} |
+ spread-phy | 4 | {bio-phylogeny,bio} |
tracetuner | 4 | {bio} |
transtermhp | 4 | {bio} |
velvetoptimiser | 4 | {bio} |
vsearch | 4 | {bio} |
- alter-sequence-alignment | 3 | {bio} |
baitfisher | 3 | {bio} |
bandage | 3 | {bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
@@ -132,33 +138,31 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000
daligner | 3 | {bio-ngs,bio} |
dascrubber | 3 | {bio} |
delly | 3 | {bio} |
+ elastix | 3 | {imaging} |
gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
lamarc | 3 | {bio} |
libminc | 3 | {imaging-dev} |
libpal-java | 3 | {bio-dev} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
+ logol | 3 | {bio} |
maffilter | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
- mlv-smile | 3 | {cloud,bio} |
mptp | 3 | {bio} |
orthanc-dicomweb | 3 | {imaging} |
pbdagcon | 3 | {bio} |
phipack | 3 | {bio} |
pilon | 3 | {bio} |
- poretools | 3 | {bio} |
- pscan-chip | 3 | {bio} |
quorum | 3 | {bio} |
rampler | 3 | {bio} |
rdp-alignment | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
repeatmasker-recon | 3 | {bio} |
samblaster | 3 | {bio} |
- scythe | 3 | {bio} |
segemehl | 3 | {bio} |
seqtools | 3 | {bio} |
- sickle | 3 | {bio} |
sprai | 3 | {bio} |
- spread-phy | 3 | {bio-phylogeny,bio} |
sweed | 3 | {bio} |
transrate-tools | 3 | {bio} |
tvc | 3 | {bio} |
@@ -176,24 +180,21 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000
cufflinks | 2 | {bio,cloud} |
dindel | 2 | {bio} |
dwgsim | 2 | {bio} |
- elastix | 2 | {imaging} |
fastml | 2 | {bio} |
freebayes | 2 | {bio} |
fsm-lite | 2 | {bio} |
hinge | 2 | {bio} |
igor | 2 | {bio} |
jmodeltest | 2 | {bio-phylogeny,bio} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- logol | 2 | {bio} |
mrs | 2 | {bio} |
nanook | 2 | {bio} |
+ opencfu | 2 | {laboratory} |
patman | 2 | {bio} |
phybin | 2 | {bio} |
prottest | 2 | {bio-phylogeny,bio} |
qcumber | 2 | {bio} |
qrisk2 | 2 | {practice} |
rambo-k | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
relion | 2 | {bio} |
roguenarok | 2 | {bio} |
rtax | 2 | {cloud,bio} |
@@ -203,8 +204,10 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
srf | 2 | {bio-dev} |
+ stacks | 2 | {bio} |
sumatra | 2 | {bio} |
trace2dbest | 2 | {bio} |
+ tree-puzzle | 2 | {cloud,bio-phylogeny,bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
edflib | 1 | {imaging-dev} |
@@ -217,15 +220,14 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000
libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libhmsbeagle | 1 | {bio-dev} |
- libsmithwaterman | 1 | {bio-dev} |
libsmithwaterman | 1 | {bio} |
+ libsmithwaterman | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
maxflow | 1 | {imaging-dev} |
medicalterms | 1 | {tools} |
mencal | 1 | {tools} |
metaphlan2 | 1 | {bio} |
nutsqlite | 1 | {tools} |
- opencfu | 1 | {laboratory} |
orthanc-mysql | 1 | {imaging} |
orthanc-postgresql | 1 | {imaging} |
pal2nal | 1 | {bio} |
@@ -238,13 +240,11 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000
sift | 1 | {bio} |
skesa | 1 | {bio} |
spaced | 1 | {bio} |
- stacks | 1 | {bio} |
stringtie | 1 | {bio} |
suitename | 1 | {bio} |
sumaclust | 1 | {bio} |
surankco | 1 | {bio} |
thesias | 1 | {bio} |
- tree-puzzle | 1 | {cloud,bio-phylogeny,bio} |
varscan | 1 | {bio} |
volpack | 1 | {imaging-dev} |
vtk-dicom | 1 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 10 Mar 2020 01:42:04 +0000
+Last-Update: Tue, 10 Mar 2020 13:42:03 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -49,14 +49,13 @@ Last-Update: Tue, 10 Mar 2020 01:42:04 +0000
mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
nanopolish | 0.11.3 | 0.12.0 | Andreas Tille | Steffen Moeller | 2019-12-22 12:49:21+00
ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
- ncbi-entrez-direct | 12.0.20190816 | 13.5.20200304 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
ngs-sdk | 2.10.2 | 2.10.4 | Andreas Tille,Olivier Sallou,Vincent Danjean | Michael R. Crusoe | 2020-02-17 15:36:45+00
pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00
picard-tools | 2.18.25 | 2.22.0 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
- plink2 | 2.00~a3-200217 | 200225 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ plink2 | 2.00~a3-200217 | 200308 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
prokka | 1.14.5 | 1.14.6 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-04 11:00:31+00
psychopy | 2020.1.1 | 2020.2.3 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-02-24 08:55:42+00
pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
@@ -94,7 +93,7 @@ Last-Update: Tue, 10 Mar 2020 01:42:04 +0000
unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(92 rows)
+(91 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c598411b845f24884acdfa1aea7e86d775bc716a
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c598411b845f24884acdfa1aea7e86d775bc716a
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200310/ecc61aa6/attachment-0001.html>