Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
5aa19473 by Andreas Tille at 2020-03-13T13:44:49+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,16 +1,16 @@
-Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
+Last-Update: Fri, 13 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 178 | {imaging} |
+ dcmtk | 177 | {imaging} |
orthanc | 101 | {practice,imaging} |
- gdcm | 45 | {imaging-dev} |
+ gdcm | 44 | {imaging-dev} |
dcm2niix | 43 | {imaging} |
orthanc-wsi | 39 | {oncology,laboratory,imaging,his,practice} |
amide | 36 | {imaging} |
dicom3tools | 31 | {imaging} |
- dicomscope | 30 | {imaging} |
- htsjdk | 29 | {bio-dev} |
+ dicomscope | 31 | {imaging} |
+ htsjdk | 28 | {bio-dev} |
gdcm | 21 | {imaging} |
pixelmed | 18 | {imaging} |
gnumed-server | 17 | {practice} |
@@ -21,39 +21,41 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
openslide | 15 | {imaging} |
adun.app | 13 | {bio} |
biojava-live | 13 | {bio-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
+ insighttoolkit4 | 13 | {imaging-dev} |
jebl2 | 12 | {bio-dev} |
vtk-dicom | 12 | {imaging} |
mia | 11 | {imaging} |
plastimatch | 11 | {imaging} |
+ psychopy | 11 | {psychology} |
tree-puzzle | 11 | {bio,bio-phylogeny,cloud} |
biosig4c++ | 10 | {imaging,physics} |
gdcm | 10 | {imaging-dev} |
librg-utils-perl | 10 | {bio} |
ncbi-entrez-direct | 10 | {bio} |
- psychopy | 10 | {psychology} |
fastlink | 9 | {cloud,bio} |
melting | 9 | {bio,cloud} |
ncbi-seg | 9 | {bio} |
- ngs-sdk | 9 | {bio-dev} |
norsp | 9 | {bio} |
sortmerna | 9 | {bio} |
staden | 9 | {bio} |
arden | 8 | {cloud,bio} |
- cgview | 8 | {bio} |
+ diamond-aligner | 8 | {bio} |
jaligner | 8 | {bio} |
maqview | 8 | {bio} |
mauve-aligner | 8 | {bio} |
mipe | 8 | {bio,cloud} |
neobio | 8 | {cloud,bio} |
+ ngs-sdk | 8 | {bio-dev} |
radiant | 8 | {bio} |
sigma-align | 8 | {bio-phylogeny,bio,cloud} |
ampliconnoise | 7 | {cloud,bio} |
+ cgview | 7 | {bio} |
+ ea-utils | 7 | {bio} |
ecopcr | 7 | {bio} |
obitools | 7 | {bio} |
+ paml | 7 | {bio} |
phyutility | 7 | {bio,cloud} |
piler | 7 | {bio} |
- rdp-readseq | 7 | {bio} |
sibsim4 | 7 | {cloud,bio} |
treeview | 7 | {bio-phylogeny,bio} |
anfo | 6 | {cloud,bio} |
@@ -61,9 +63,7 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
biomaj3-cli | 6 | {cloud} |
bio-tradis | 6 | {bio-dev,bio} |
dazzdb | 6 | {bio} |
- diamond-aligner | 6 | {bio} |
dicompyler | 6 | {oncology} |
- ea-utils | 6 | {bio} |
edtsurf | 6 | {bio} |
embassy-domainatrix | 6 | {cloud,bio} |
embassy-domalign | 6 | {bio,cloud} |
@@ -71,22 +71,24 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
freecontact | 6 | {bio,cloud} |
gasic | 6 | {cloud,bio} |
idba | 6 | {bio,cloud} |
+ king-probe | 6 | {bio} |
libdivsufsort | 6 | {bio-dev} |
libsbml | 6 | {bio-dev} |
- paml | 6 | {bio} |
paraclu | 6 | {cloud,bio} |
perm | 6 | {cloud,bio} |
predictprotein | 6 | {bio} |
prime-phylo | 6 | {cloud,bio} |
probabel | 6 | {bio,cloud} |
+ pscan-tfbs | 6 | {bio} |
+ rdp-readseq | 6 | {bio} |
saint | 6 | {bio} |
seqsero | 6 | {bio} |
squizz | 6 | {bio,cloud} |
+ transtermhp | 6 | {bio} |
zalign | 6 | {cloud,bio} |
alter-sequence-alignment | 5 | {bio} |
assemblytics | 5 | {bio} |
bppsuite | 5 | {bio} |
- brig | 5 | {bio} |
codonw | 5 | {bio} |
daligner | 5 | {bio-ngs,bio} |
estscan | 5 | {bio} |
@@ -95,7 +97,6 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
indelible | 5 | {bio} |
ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
- king-probe | 5 | {bio} |
lagan | 5 | {bio} |
libncl | 5 | {bio} |
lucy | 5 | {bio} |
@@ -110,18 +111,18 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
poretools | 5 | {bio} |
proalign | 5 | {bio-phylogeny,bio} |
pscan-chip | 5 | {bio} |
- pscan-tfbs | 5 | {bio} |
pymia | 5 | {imaging-dev} |
salmon | 5 | {bio} |
scythe | 5 | {bio} |
seer | 5 | {bio} |
sickle | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
- transtermhp | 5 | {bio} |
+ abacas | 4 | {bio} |
baitfisher | 4 | {bio} |
beads | 4 | {bio} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
bitseq | 4 | {bio} |
+ brig | 4 | {bio} |
canu | 4 | {bio} |
centrifuge | 4 | {bio} |
clonalorigin | 4 | {bio} |
@@ -129,20 +130,18 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
dascrubber | 4 | {bio} |
elastix | 4 | {imaging} |
elph | 4 | {bio} |
+ freebayes | 4 | {bio} |
lamarc | 4 | {bio} |
libpal-java | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
logol | 4 | {bio} |
maffilter | 4 | {bio} |
mptp | 4 | {bio} |
- openslide | 4 | {imaging-dev} |
- parsnp | 4 | {bio} |
pbdagcon | 4 | {bio} |
phipack | 4 | {bio} |
plasmidseeker | 4 | {bio} |
quorum | 4 | {bio} |
rambo-k | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
repeatmasker-recon | 4 | {bio} |
@@ -152,7 +151,6 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
transrate-tools | 4 | {bio} |
velvetoptimiser | 4 | {bio} |
vsearch | 4 | {bio} |
- abacas | 3 | {bio} |
andi | 3 | {bio} |
bandage | 3 | {bio} |
bart-view | 3 | {imaging} |
@@ -164,7 +162,6 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
dindel | 3 | {bio} |
dwgsim | 3 | {bio} |
fastml | 3 | {bio} |
- freebayes | 3 | {bio} |
fsm-lite | 3 | {bio} |
gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
@@ -174,13 +171,16 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
libgff | 3 | {bio-dev} |
libminc | 3 | {imaging-dev} |
nanook | 3 | {bio} |
+ openslide | 3 | {imaging-dev} |
orthanc-dicomweb | 3 | {imaging} |
+ parsnp | 3 | {bio} |
patman | 3 | {bio} |
phybin | 3 | {bio} |
pilon | 3 | {bio} |
prottest | 3 | {bio-phylogeny,bio} |
qcumber | 3 | {bio} |
rampler | 3 | {bio} |
+ rdp-alignment | 3 | {bio} |
roguenarok | 3 | {bio} |
rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
@@ -199,6 +199,7 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
biosig4c++ | 2 | {physics,imaging-dev} |
ctn | 2 | {imaging-dev} |
cufflinks | 2 | {bio,cloud} |
+ hunspell-en-med | 2 | {tools} |
igor | 2 | {bio} |
libsmithwaterman | 2 | {bio} |
metaphlan2 | 2 | {bio} |
@@ -216,13 +217,13 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
surankco | 2 | {bio} |
trace2dbest | 2 | {bio} |
tree-puzzle | 2 | {cloud,bio-phylogeny,bio} |
+ volpack | 2 | {imaging-dev} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
edflib | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
emmax | 1 | {bio} |
fasta3 | 1 | {bio} |
- hunspell-en-med | 1 | {tools} |
kma | 1 | {bio} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
@@ -245,7 +246,6 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
thesias | 1 | {bio} |
tnseq-transit | 1 | {bio} |
varscan | 1 | {bio} |
- volpack | 1 | {imaging-dev} |
vtk-dicom | 1 | {imaging-dev} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
+Last-Update: Fri, 13 Mar 2020 13:42:03 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -17,8 +17,9 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
bowtie2 | 2.3.5.1 | 2.4.1 | Alexandre Mestiashvili,Andreas Tille | Michael R. Crusoe | 2019-12-19 16:34:16+00
charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00
ctdopts | 1.2 | 1.3 | Michael R. Crusoe | Michael R. Crusoe | 2018-02-28 12:34:26+00
- cwltool | 2.0.20200224214940 | 2.0.20200303141624 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
+ cwltool | 2.0.20200224214940 | 2.0.20200312183052 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00
+ delly | 0.8.2 | 0.8.3 | Steffen Moeller | Andrius Merkys | 2020-02-06 13:05:04+00
ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00
epigrass | 2.5.0 | 2.6.0 | Andreas Tille,Thorsten Alteholz | Andreas Tille | 2019-09-13 19:48:50+00
@@ -98,7 +99,7 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000
unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(96 rows)
+(97 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5aa19473f9afc5d58ac4c1d8944355f070a63a03
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5aa19473f9afc5d58ac4c1d8944355f070a63a03
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