[med-svn] [Git][med-team/idba][master] 5 commits: Renamed manpage folders

[Pranav Ballaney]

Pranav Ballaney pushed to branch master at Debian Med / idba


Commits:
c1fc0c70 by Pranav Ballaney at 2020-03-12T10:43:25+05:30
Renamed manpage folders

- - - - -
09f63509 by Pranav Ballaney at 2020-03-13T10:32:25+05:30
Install bin/*.py in lib

- - - - -
4a49bfb3 by Pranav Ballaney at 2020-03-13T21:58:43+05:30
Added data sources

- - - - -
8685aa08 by Pranav Ballaney at 2020-03-13T22:13:38+05:30
Changed manpage directories in debian/createmanpages

- - - - -
4f752ea3 by Pranav Ballaney at 2020-03-13T22:14:22+05:30
Updated changelog

- - - - -


15 changed files:

- debian/changelog
- debian/createmanpages
- debian/idba-extra/filter_blat.1 → debian/idba-extra-man/filter_blat.1
- debian/idba-extra/filter_contigs.1 → debian/idba-extra-man/filter_contigs.1
- debian/idba-extra/fq2fa.1 → debian/idba-extra-man/fq2fa.1
- debian/idba-extra/sim_reads.1 → debian/idba-extra-man/sim_reads.1
- debian/idba-extra/sim_reads_tran.1 → debian/idba-extra-man/sim_reads_tran.1
- debian/idba-extra.manpages
- debian/idba/idba.1 → debian/idba-man/idba.1
- debian/idba/idba_hybrid.1 → debian/idba-man/idba_hybrid.1
- debian/idba/idba_tran.1 → debian/idba-man/idba_tran.1
- debian/idba/idba_ud.1 → debian/idba-man/idba_ud.1
- debian/idba.install
- debian/idba.manpages
- + debian/tests/test_data/data-source.sh


Changes:

=====================================
debian/changelog
=====================================
@@ -18,8 +18,17 @@ idba (1.1.3-6) UNRELEASED; urgency=medium
   * Set upstream metadata fields: Bug-Database, Repository.
   * Make sure sim_reads will be found in test suite
   * Add few manpages for tools inside idba-extra (more would be nice)
+  * sim_reads.1
+  * sim_reads_tran.1
+  * Install from debian/tmp to avoid warnings from dh_missing
 
- -- Pranav Ballaney <ballaneypranav at gmail.com>  Tue, 10 Mar 2020 01:12:44 +0530
+  [ Pranav Ballaney ]
+  * Renamed manpage folders
+  * Install bin/*.py in lib
+  * Added data sources
+  * Changed manpage directories in debian/createmanpages
+
+ -- Pranav Ballaney <ballaneypranav at gmail.com>  Fri, 13 Mar 2020 22:13:47 +0530
 
 idba (1.1.3-5) unstable; urgency=medium
 


=====================================
debian/createmanpages
=====================================
@@ -1,5 +1,5 @@
 #!/bin/sh
-MANDIR=debian/idba
+MANDIR=debian/idba-man
 mkdir -p $MANDIR
 
 VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
@@ -41,7 +41,7 @@ echo "$MANDIR/*.1" > debian/${PROGNAME}.manpages
 
 ################ for idba-extra package
 
-MANDIR=debian/idba-extra
+MANDIR=debian/idba-extra-man
 mkdir -p $MANDIR
 
 progname=fq2fa


=====================================
debian/idba-extra/filter_blat.1 → debian/idba-extra-man/filter_blat.1
=====================================


=====================================
debian/idba-extra/filter_contigs.1 → debian/idba-extra-man/filter_contigs.1
=====================================


=====================================
debian/idba-extra/fq2fa.1 → debian/idba-extra-man/fq2fa.1
=====================================


=====================================
debian/idba-extra/sim_reads.1 → debian/idba-extra-man/sim_reads.1
=====================================


=====================================
debian/idba-extra/sim_reads_tran.1 → debian/idba-extra-man/sim_reads_tran.1
=====================================


=====================================
debian/idba-extra.manpages
=====================================
@@ -1 +1 @@
-debian/idba-extra/*.1
+debian/idba-extra-man/*.1


=====================================
debian/idba/idba.1 → debian/idba-man/idba.1
=====================================


=====================================
debian/idba/idba_hybrid.1 → debian/idba-man/idba_hybrid.1
=====================================


=====================================
debian/idba/idba_tran.1 → debian/idba-man/idba_tran.1
=====================================


=====================================
debian/idba/idba_ud.1 → debian/idba-man/idba_ud.1
=====================================


=====================================
debian/idba.install
=====================================
@@ -1,5 +1,4 @@
 usr/bin/i*		usr/bin
 usr/bin/s*		usr/bin
 usr/bin/v*		usr/bin
-# run-unittest.py should probably go to documentation
-usr/bin/run-unittest.py	usr/share/doc/idba
+usr/bin/*.py	usr/lib/idba


=====================================
debian/idba.manpages
=====================================
@@ -1 +1 @@
-debian/idba/*.1
+debian/idba-man/*.1


=====================================
debian/tests/test_data/data-source.sh
=====================================
@@ -0,0 +1,13 @@
+# All the data used for testing was obtained from a Google Code repository,
+# maintained by the authors of the program.
+# https://code.google.com/archive/p/hku-idba/downloads
+
+# It was later modified to reduce the file size generated for testing.
+# (The original files generate testing data on the order of gigabytes.)
+
+# For idba-tran
+wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/hku-idba/tran-sample-data.tar.gz
+# For idba-hybrid
+wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/hku-idba/hybrid-sample-data.tar.gz
+# For idba-ud
+wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/hku-idba/lacto-genus.tar.gz



View it on GitLab: https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c

-- 
View it on GitLab: https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200313/6b25e269/attachment-0001.html>