Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e23315dd by Andreas Tille at 2020-03-16T13:49:54+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,30 +1,30 @@
-Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
+Last-Update: Mon, 16 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {imaging} |
- orthanc | 102 | {practice,imaging} |
- gdcm | 47 | {imaging-dev} |
- dcm2niix | 43 | {imaging} |
- orthanc-wsi | 39 | {oncology,laboratory,imaging,his,practice} |
+ dcmtk | 182 | {imaging} |
+ orthanc | 104 | {practice,imaging} |
+ gdcm | 46 | {imaging-dev} |
+ orthanc-wsi | 41 | {oncology,laboratory,imaging,his,practice} |
amide | 36 | {imaging} |
dicomscope | 33 | {imaging} |
- htsjdk | 32 | {bio-dev} |
+ htsjdk | 33 | {bio-dev} |
+ dcm2niix | 32 | {imaging} |
dicom3tools | 29 | {imaging} |
- gdcm | 20 | {imaging} |
- gnumed-server | 18 | {practice} |
+ gdcm | 19 | {imaging} |
+ gnumed-server | 19 | {practice} |
pixelmed | 18 | {imaging} |
king | 17 | {imaging,typesetting} |
- invesalius | 16 | {imaging} |
+ ngs-sdk | 17 | {bio-dev} |
minc-tools | 16 | {imaging} |
- ngs-sdk | 16 | {bio-dev} |
- insighttoolkit4 | 15 | {imaging-dev} |
+ invesalius | 15 | {imaging} |
openslide | 15 | {imaging} |
+ insighttoolkit4 | 14 | {imaging-dev} |
adun.app | 13 | {bio} |
biojava-live | 13 | {bio-dev} |
- plastimatch | 13 | {imaging} |
+ vtk-dicom | 13 | {imaging} |
+ plastimatch | 12 | {imaging} |
psychopy | 12 | {psychology} |
- vtk-dicom | 12 | {imaging} |
jebl2 | 11 | {bio-dev} |
mia | 11 | {imaging} |
tree-puzzle | 11 | {bio,bio-phylogeny,cloud} |
@@ -32,7 +32,6 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
librg-utils-perl | 10 | {bio} |
ncbi-entrez-direct | 10 | {bio} |
fastlink | 9 | {cloud,bio} |
- gdcm | 9 | {imaging-dev} |
melting | 9 | {bio,cloud} |
ncbi-seg | 9 | {bio} |
norsp | 9 | {bio} |
@@ -40,6 +39,7 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
staden | 9 | {bio} |
arden | 8 | {cloud,bio} |
diamond-aligner | 8 | {bio} |
+ gdcm | 8 | {imaging-dev} |
maqview | 8 | {bio} |
mauve-aligner | 8 | {bio} |
mipe | 8 | {bio,cloud} |
@@ -74,6 +74,7 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
king-probe | 6 | {bio} |
libdivsufsort | 6 | {bio-dev} |
libsbml | 6 | {bio-dev} |
+ orthanc-webviewer | 6 | {imaging} |
paraclu | 6 | {cloud,bio} |
perm | 6 | {cloud,bio} |
poretools | 6 | {bio} |
@@ -95,6 +96,7 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
elastix | 5 | {imaging} |
estscan | 5 | {bio} |
fitgcp | 5 | {bio,cloud} |
+ freebayes | 5 | {bio} |
harvest-tools | 5 | {bio} |
indelible | 5 | {bio} |
ipig | 5 | {bio} |
@@ -107,7 +109,6 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
microbegps | 5 | {bio} |
mlv-smile | 5 | {cloud,bio} |
murasaki | 5 | {bio} |
- orthanc-webviewer | 5 | {imaging} |
phast | 5 | {bio} |
placnet | 5 | {bio} |
proalign | 5 | {bio-phylogeny,bio} |
@@ -129,7 +130,6 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
cluster3 | 4 | {bio} |
dascrubber | 4 | {bio} |
elph | 4 | {bio} |
- freebayes | 4 | {bio} |
lamarc | 4 | {bio} |
libpal-java | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
@@ -181,6 +181,7 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
pilon | 3 | {bio} |
prottest | 3 | {bio-phylogeny,bio} |
qcumber | 3 | {bio} |
+ qrisk2 | 3 | {practice} |
rampler | 3 | {bio} |
rdp-alignment | 3 | {bio} |
roguenarok | 3 | {bio} |
@@ -205,7 +206,6 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
metaphlan2 | 2 | {bio} |
opencfu | 2 | {laboratory} |
pal2nal | 2 | {bio} |
- qrisk2 | 2 | {practice} |
relion | 2 | {bio} |
scrm | 2 | {bio} |
seqmagick | 2 | {bio} |
@@ -233,6 +233,7 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
libvistaio | 1 | {imaging-dev} |
maxflow | 1 | {imaging-dev} |
mencal | 1 | {tools} |
+ ngs-sdk | 1 | {bio-dev} |
nutsqlite | 1 | {tools} |
opensurgsim | 1 | {imaging-dev} |
orthanc-mysql | 1 | {imaging} |
@@ -293,7 +294,6 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
mssstest | 0 | {tools} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
- ngs-sdk | 0 | {bio-dev} |
orthanc-imagej | 0 | {imaging} |
oscar | 0 | {tools,data,practice} |
pbcopper | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
+Last-Update: Mon, 16 Mar 2020 13:42:03 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -31,7 +31,7 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
htsjdk | 2.18.2 | 2.21.3 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00
- hyphy | 2.5.1 | 2.5.5 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
+ hyphy | 2.5.1 | 2.5.6 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
igraph | 0.8.0 | 0.8.1 | Andreas Tille | Andreas Tille | 2020-03-14 20:10:56+00
igv | 2.4.17 | 2.8.1 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
@@ -45,7 +45,7 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200313.db8cd8f | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libmaus2 | 2.0.698 | 2.0.709 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
+ libmaus2 | 2.0.698 | 2.0.711 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
@@ -71,7 +71,8 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
python-cgecore | 1.5.2 | 1.5.3 | Andreas Tille | Steffen Moeller | 2020-01-06 17:05:53+00
python-cobra | 0.14.2 | 0.17.1 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
- python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200304.58aa544 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
+ python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200313.2a40099 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
+ python-pbcore | 1.7.1+git20200206.d66cbbf | 1.7.1+git20200313.41ba394 | Andreas Tille | Andreas Tille | 2020-02-25 08:42:20+00
python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
python-treetime | 0.7.1 | 0.7.4 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00
@@ -104,7 +105,7 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(102 rows)
+(103 rows)
source | id | severity | title
@@ -189,7 +190,6 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
insighttoolkit4 | 853752 | wishlist | src:insighttoolkit4: Add documentation package
insighttoolkit4 | 943677 | normal | please package insighttoolkit5 (5.0 and 5.1 beta 1 are out)
insighttoolkit4 | 944179 | important | insighttoolkit4: non-standard gcc/g++ used for build (gcc-8)
- insighttoolkit4 | 952599 | serious | insighttoolkit4 build depends on the removed swig3.0
ismrmrd | 863168 | important | ismrmrd FTBFS on armhf: 1 failure is detected in the test module "ISMRMRD Unit Tests"
jellyfish1 | 875328 | wishlist | jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined
khmer | 851830 | minor | arm64 has flaky tests
@@ -307,5 +307,5 @@ Last-Update: Mon, 16 Mar 2020 01:42:04 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(198 rows)
+(197 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e23315dd009a10a99bc6a16617d8493678dc51f9
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e23315dd009a10a99bc6a16617d8493678dc51f9
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