[med-svn] [Git][med-team/libmaus2][master] 6 commits: New upstream version 2.0.712+ds

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / libmaus2


Commits:
50a37978 by Steffen Moeller at 2020-03-17T14:51:00+01:00
New upstream version 2.0.712+ds
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979a6092 by Steffen Moeller at 2020-03-17T14:51:00+01:00
routine-update: New upstream version

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99367fee by Steffen Moeller at 2020-03-17T14:51:05+01:00
Update upstream source from tag 'upstream/2.0.712+ds'

Update to upstream version '2.0.712+ds'
with Debian dir c6a891febe14c9e3f46ec0a4860c9b788cc6a040
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a5002bfa by Steffen Moeller at 2020-03-17T14:51:08+01:00
routine-update: Add salsa-ci file

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f3678102 by Steffen Moeller at 2020-03-17T14:51:08+01:00
routine-update: Rules-Requires-Root: no

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a914837d by Steffen Moeller at 2020-03-17T15:23:52+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- ChangeLog
- configure.ac
- debian/changelog
- debian/control
- + debian/salsa-ci.yml
- libmaus2.pc.in
- src/Makefile.am
- src/libmaus2/LibMausConfig.hpp.in
- + src/libmaus2/avl/AVLSet.hpp
- src/libmaus2/bambam/BamAlignment.hpp
- src/libmaus2/bambam/BamAlignmentDecoderBase.hpp
- src/libmaus2/bambam/BamAlignmentDecoderInfo.hpp
- src/libmaus2/bambam/BamBlockWriterBaseFactory.hpp
- src/libmaus2/bambam/BamHeader.hpp
- src/libmaus2/bambam/BamHeaderLowMem.hpp
- + src/libmaus2/bambam/BamHeaderReadGroupInterface.hpp
- src/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp
- src/libmaus2/bambam/ChecksumsFactory.cpp
- src/libmaus2/bambam/ChecksumsFactory.hpp
- src/libmaus2/bambam/CigarRunLengthDecoder.hpp
- src/libmaus2/bambam/DupMarkBase.hpp
- src/libmaus2/bambam/OpticalComparator.hpp
- src/libmaus2/bambam/ReadEndsBase.hpp
- src/libmaus2/bambam/Scram.c
- src/libmaus2/bambam/parallel/BlockMergeControl.hpp
- src/libmaus2/bambam/parallel/ScramCramEncoding.hpp
- + src/libmaus2/fastx/GCContent.hpp
- src/libmaus2/geometry/RangeSet.hpp
- src/libmaus2/gtf/Exon.hpp
- src/libmaus2/gtf/GTFData.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/compare/6f3037f2cb6194a21ac88a7981dcca46c97cccb3...a914837db3c1c4c11fe97b69f9e116d2dd5ffd91

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View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/compare/6f3037f2cb6194a21ac88a7981dcca46c97cccb3...a914837db3c1c4c11fe97b69f9e116d2dd5ffd91
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