[med-svn] [Git][med-team/libmaus2][upstream] New upstream version 2.0.712+ds

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / libmaus2


Commits:
50a37978 by Steffen Moeller at 2020-03-17T14:51:00+01:00
New upstream version 2.0.712+ds
- - - - -


30 changed files:

- ChangeLog
- configure.ac
- libmaus2.pc.in
- src/Makefile.am
- src/libmaus2/LibMausConfig.hpp.in
- + src/libmaus2/avl/AVLSet.hpp
- src/libmaus2/bambam/BamAlignment.hpp
- src/libmaus2/bambam/BamAlignmentDecoderBase.hpp
- src/libmaus2/bambam/BamAlignmentDecoderInfo.hpp
- src/libmaus2/bambam/BamBlockWriterBaseFactory.hpp
- src/libmaus2/bambam/BamHeader.hpp
- src/libmaus2/bambam/BamHeaderLowMem.hpp
- + src/libmaus2/bambam/BamHeaderReadGroupInterface.hpp
- src/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp
- src/libmaus2/bambam/ChecksumsFactory.cpp
- src/libmaus2/bambam/ChecksumsFactory.hpp
- src/libmaus2/bambam/CigarRunLengthDecoder.hpp
- src/libmaus2/bambam/DupMarkBase.hpp
- src/libmaus2/bambam/OpticalComparator.hpp
- src/libmaus2/bambam/ReadEndsBase.hpp
- src/libmaus2/bambam/Scram.c
- src/libmaus2/bambam/parallel/BlockMergeControl.hpp
- src/libmaus2/bambam/parallel/ScramCramEncoding.hpp
- + src/libmaus2/fastx/GCContent.hpp
- src/libmaus2/geometry/RangeSet.hpp
- src/libmaus2/gtf/Exon.hpp
- src/libmaus2/gtf/GTFData.hpp
- src/libmaus2/gtf/Gene.hpp
- src/libmaus2/gtf/Transcript.hpp
- src/libmaus2/gtf/TranscriptRangeSets.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/commit/50a37978ac51873b44172b365e987312dd54e5db

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View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/commit/50a37978ac51873b44172b365e987312dd54e5db
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