[med-svn] [Git][med-team/ragout][master] 7 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / ragout


Commits:
a17c73df by Andreas Tille at 2020-03-18T11:40:44+01:00
routine-update: New upstream version

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93dc2cfd by Andreas Tille at 2020-03-18T11:40:46+01:00
New upstream version 2.3
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8063f8d6 by Andreas Tille at 2020-03-18T11:42:12+01:00
Update upstream source from tag 'upstream/2.3'

Update to upstream version '2.3'
with Debian dir f86039be2ed82208c3179e1d730c4fd872356d36
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196e732f by Andreas Tille at 2020-03-18T11:42:13+01:00
routine-update: Standards-Version: 4.5.0

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38c556e1 by Andreas Tille at 2020-03-18T19:47:49+01:00
Adjust patches

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027b961e by Andreas Tille at 2020-03-18T19:50:06+01:00
Build-Depends: python3-setuptools

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53c2a2b5 by Andreas Tille at 2020-03-18T19:57:48+01:00
Hopefully sibelia will be accepted soon

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30 changed files:

- .travis.yml
- README.md
- bin/ragout
- debian/changelog
- debian/control
- − debian/patches/2to3.patch
- debian/patches/series
- debian/tests/control → debian/tests/control_needs_sibelia
- docs/INSTALL.md
- docs/NEWS.md
- ragout/__version__.py
- ragout/assembly_graph/assembly_refine.py
- ragout/breakpoint_graph/breakpoint_graph.py
- ragout/breakpoint_graph/chimera_detector.py
- ragout/breakpoint_graph/inferer.py
- ragout/breakpoint_graph/permutation.py
- ragout/breakpoint_graph/repeat_resolver.py
- ragout/maf2synteny/maf2synteny.py
- ragout/main.py
- ragout/newick/__init__.py
- ragout/newick/lexer.py
- − ragout/newick/lexertest.py
- ragout/newick/parser.py
- − ragout/newick/parsertest.py
- ragout/newick/tokens.py
- ragout/newick/tree.py
- − ragout/newick/treetest.py
- ragout/overlap/overlap.py
- ragout/parsers/fasta_parser.py
- ragout/parsers/phylogeny_parser.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ragout/-/compare/024cac2930b98710da543ea88f4481905231c79e...53c2a2b557240870a13fa089da10b2fb8a3581aa

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View it on GitLab: https://salsa.debian.org/med-team/ragout/-/compare/024cac2930b98710da543ea88f4481905231c79e...53c2a2b557240870a13fa089da10b2fb8a3581aa
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