[med-svn] [Git][med-team/spades][master] yamllint d/u/metadata, added bioconda ref
Steffen Möller
gitlab at salsa.debian.org
Thu Mar 19 00:07:04 GMT 2020
Steffen Möller pushed to branch master at Debian Med / spades
Commits:
fa710c6b by Steffen Moeller at 2020-03-19T01:06:57+01:00
yamllint d/u/metadata, added bioconda ref
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=====================================
debian/upstream/metadata
=====================================
@@ -1,123 +1,125 @@
Reference:
-- Author: >
+ - Author: >
Anton Bankevich and Sergey Nurk and Dmitry Antipov and Alexey
A. Gurevich and Mikhail Dvorkin and Alexander S. Kulikov and Valery
M. Lesin and Sergey I. Nikolenko and Son Pham and Andrey D. Prjibelski
and Alexey V. Pyshkin and Alexander V. Sirotkin and Nikolay Vyahhi
and Glenn Tesler and Max A. Alekseyev and Pavel A. Pevzner
- Title: >
+ Title: >
SPAdes: A New Genome Assembly Algorithm and Its Applications to
Single-Cell Sequencing
- Journal: Journal of Computational Biology
- Year: 2012
- Volume: 19
- Number: 5
- Pages: 455-477
- DOI: 10.1089/cmb.2012.0021
- PMID: 22506599
- URL: http://online.liebertpub.com/doi/abs/10.1089/cmb.2012.0021
- eprint: http://online.liebertpub.com/doi/pdfplus/10.1089/cmb.2012.0021
-- Author: >
+ Journal: Journal of Computational Biology
+ Year: 2012
+ Volume: 19
+ Number: 5
+ Pages: 455-477
+ DOI: 10.1089/cmb.2012.0021
+ PMID: 22506599
+ URL: http://online.liebertpub.com/doi/abs/10.1089/cmb.2012.0021
+ eprint: http://online.liebertpub.com/doi/pdfplus/10.1089/cmb.2012.0021
+ - Author: >
Sergey Nurk and Anton Bankevich and Dmitry Antipov and Alexey Gurevich
and Anton Korobeynikov and Alla Lapidus and Andrey Prjibelsky and
Alexey Pyshkin and Alexander Sirotkin and Yakov Sirotkin and Ramunas
Stepanauskas and Jeffrey McLean and Roger Lasken and Scott Clingenpeel
and Tanja Woyke and Glenn Tesler and Max Alekseyev and Pavel Pevzner
- Title: Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads
- Journal: Lecture Notes in Computer Science
- Year: 2013
- Volume: 7821
- Pages: 158-170
- DOI: 10.1007/978-3-642-37195-0_13
- URL: http://link.springer.com/chapter/10.1007%2F978-3-642-37195-0_13
-- Author: >
+ Title: Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads
+ Journal: Lecture Notes in Computer Science
+ Year: 2013
+ Volume: 7821
+ Pages: 158-170
+ DOI: 10.1007/978-3-642-37195-0_13
+ URL: http://link.springer.com/chapter/10.1007%2F978-3-642-37195-0_13
+ - Author: >
Prjibelski, Andrey D. and Vasilinetc, Irina and Bankevich, Anton and
Gurevich, Alexey and Krivosheeva, Tatiana and Nurk, Sergey and
Pham, Son and Korobeynikov, Anton and Lapidus, Alla and Pevzner, Pavel A.
- Title: >
+ Title: >
ExSPAnder: a universal repeat resolver for DNA fragment assembly
- Journal: Bioinformatics
- Volume: 30
- Number: 12
- Pages: i293-i301
- Year: 2014
- Month: 06
- ISSN: 1367-4803
- DOI: 10.1093/bioinformatics/btu266
- URL: https://doi.org/10.1093/bioinformatics/btu266
- eprint: http://oup.prod.sis.lan/bioinformatics/article-pdf/30/12/i293/1089266/btu266.pdf
-- Author: >
+ Journal: Bioinformatics
+ Volume: 30
+ Number: 12
+ Pages: i293-i301
+ Year: 2014
+ Month: 06
+ ISSN: 1367-4803
+ DOI: 10.1093/bioinformatics/btu266
+ URL: https://doi.org/10.1093/bioinformatics/btu266
+ eprint: http://oup.prod.sis.lan/bioinformatics/article-pdf/30/12/i293/1089266/btu266.pdf
+ - Author: >
Vasilinetc, Irina and Prjibelski, Andrey D. and Gurevich, Alexey and
Korobeynikov, Anton and Pevzner, Pavel A.
- Title: Assembling short reads from jumping libraries with large insert sizes
- Journal: Bioinformatics
- Volume: 31
- Number: 20
- Pages: 3262-3268
- Year: 2015
- Month: 06
- ISSN: 1367-4803
- DOI: 10.1093/bioinformatics/btv337
- URL: https://doi.org/10.1093/bioinformatics/btv337
- eprint: http://oup.prod.sis.lan/bioinformatics/article-pdf/31/20/3262/17087738/btv337.pdf
-- Author: >
+ Title: Assembling short reads from jumping libraries with large insert sizes
+ Journal: Bioinformatics
+ Volume: 31
+ Number: 20
+ Pages: 3262-3268
+ Year: 2015
+ Month: 06
+ ISSN: 1367-4803
+ DOI: 10.1093/bioinformatics/btv337
+ URL: https://doi.org/10.1093/bioinformatics/btv337
+ eprint: http://oup.prod.sis.lan/bioinformatics/article-pdf/31/20/3262/17087738/btv337.pdf
+ - Author: >
Antipov, Dmitry and Hartwick, Nolan and Shen, Max and Raiko, Mikhail and
Lapidus, Alla and Pevzner, Pavel A.
- Title: >
+ Title: >
plasmidSPAdes: assembling plasmids from whole genome sequencing data
- Journal: Bioinformatics
- Volume: 32
- Number: 22
- Pages: 3380-3387
- Year: 2016
- Month: 07
- ISSN: 1367-4803
- DOI: 10.1093/bioinformatics/btw493
- URL: https://doi.org/10.1093/bioinformatics/btw493
- eprint: http://oup.prod.sis.lan/bioinformatics/article-pdf/32/22/3380/16920848/btw493.pdf
-- Author: >
+ Journal: Bioinformatics
+ Volume: 32
+ Number: 22
+ Pages: 3380-3387
+ Year: 2016
+ Month: 07
+ ISSN: 1367-4803
+ DOI: 10.1093/bioinformatics/btw493
+ URL: https://doi.org/10.1093/bioinformatics/btw493
+ eprint: http://oup.prod.sis.lan/bioinformatics/article-pdf/32/22/3380/16920848/btw493.pdf
+ - Author: >
Nurk, Sergey and Meleshko, Dmitry and Korobeynikov, Anton and
Pevzner, Pavel A.
- Title: >
+ Title: >
metaSPAdes: a new versatile metagenomic assembler
- Volume: 27
- Number: 5
- Pages: 824-834
- Year: 2017
- DOI: 10.1101/gr.213959.116
- URL: http://genome.cshlp.org/content/27/5/824.abstract
- eprint: http://genome.cshlp.org/content/27/5/824.full.pdf+html
- Journal: Genome Research
-- Author: >
+ Volume: 27
+ Number: 5
+ Pages: 824-834
+ Year: 2017
+ DOI: 10.1101/gr.213959.116
+ URL: http://genome.cshlp.org/content/27/5/824.abstract
+ eprint: http://genome.cshlp.org/content/27/5/824.full.pdf+html
+ Journal: Genome Research
+ - Author: >
Bushmanova, Elena and Antipov, Dmitry and Lapidus, Alla and
Prjibelski, Andrey D
- Title: >
+ Title: >
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
- Journal: GigaScience
- Volume: 8
- Number: 9
- Year: 2019
- Month: 09
- ISSN: 2047-217X
- DOI: 10.1093/gigascience/giz100
- URL: https://doi.org/10.1093/gigascience/giz100
- eprint: http://oup.prod.sis.lan/gigascience/article-pdf/8/9/giz100/29533229/giz100.pdf
-- Author: >
+ Journal: GigaScience
+ Volume: 8
+ Number: 9
+ Year: 2019
+ Month: 09
+ ISSN: 2047-217X
+ DOI: 10.1093/gigascience/giz100
+ URL: https://doi.org/10.1093/gigascience/giz100
+ eprint: http://oup.prod.sis.lan/gigascience/article-pdf/8/9/giz100/29533229/giz100.pdf
+ - Author: >
Meleshko, Dmitry and Mohimani, Hosein and Traccana, Vittorio and
Hajirasouliha, Iman and Medema, Marnix H and Korobeynikov, Anton and
Pevzner, Pavel A
- Title: >
+ Title: >
BiosyntheticSPAdes: Reconstructing Biosynthetic Gene Clusters From Assembly Graphs
- Year: 2019
- DOI: 10.1101/gr.243477.118
- URL: http://genome.cshlp.org/content/early/2019/06/03/gr.243477.118.abstract
- eprint: http://genome.cshlp.org/content/early/2019/06/03/gr.243477.118.full.pdf+html
- Journal: Genome Research
+ Year: 2019
+ DOI: 10.1101/gr.243477.118
+ URL: http://genome.cshlp.org/content/early/2019/06/03/gr.243477.118.abstract
+ eprint: http://genome.cshlp.org/content/early/2019/06/03/gr.243477.118.full.pdf+html
+ Journal: Genome Research
Registry:
-- Name: SciCrunch
- Entry: SCR_000131
-- Name: OMICtools
- Entry: OMICS_01502
-- Name: bio.tools
- Entry: Spades
+ - Name: SciCrunch
+ Entry: SCR_000131
+ - Name: conda:bioconda
+ Entry: spades
+ - Name: OMICtools
+ Entry: OMICS_01502
+ - Name: bio.tools
+ Entry: Spades
Repository: https://github.com/ablab/spades
View it on GitLab: https://salsa.debian.org/med-team/spades/-/commit/fa710c6bc1a01e25419af9cbb696eb44dde64eb6
--
View it on GitLab: https://salsa.debian.org/med-team/spades/-/commit/fa710c6bc1a01e25419af9cbb696eb44dde64eb6
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