[med-svn] [Git][med-team/spades][master] Tempted to upload - @Michael?

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / spades


Commits:
a07eb142 by Steffen Moeller at 2020-03-19T01:35:35+01:00
Tempted to upload - @Michael?

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,11 +1,18 @@
 spades (3.14.0+dfsg-1) UNRELEASED; urgency=medium
 
   * New upstream version
+  [Michael Crusoe]
   * Refreshed patches
   * debian/upstream/metadata: Added many missing papers
     TODO: re-audit debian/copyright
           upload replacement libhat-trie? Or use the code copy inside spades?
           investigate llvm inclusion
+  [Steffen Moeller]
+  * d/u/metadata
+    - yamllint cleanliness
+    - added ref to bioconda
+  * Standards-Version: 4.5.0
+    COMMENT: Compiles for me
 
  -- Michael R. Crusoe <michael.crusoe at gmail.com>  Wed, 01 Jan 2020 10:05:57 +0100
 


=====================================
debian/control
=====================================
@@ -25,10 +25,11 @@ Build-Depends: debhelper-compat (= 12),
                bwa,
                libbwa-dev,
                lynx
-Standards-Version: 4.4.1
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/spades
 Vcs-Git: https://salsa.debian.org/med-team/spades.git
 Homepage: http://cab.spbu.ru/software/spades/
+Rules-Requires-Root: no
 
 Package: spades
 Architecture: any


=====================================
debian/upstream/metadata
=====================================
@@ -45,21 +45,24 @@ Reference:
    ISSN: 1367-4803
    DOI: 10.1093/bioinformatics/btu266
    URL: https://doi.org/10.1093/bioinformatics/btu266
-   eprint: http://oup.prod.sis.lan/bioinformatics/article-pdf/30/12/i293/1089266/btu266.pdf
+   eprint: "http://oup.prod.sis.lan/bioinformatics/article-pdf/
+    30/12/i293/1089266/btu266.pdf"
  - Author: >
     Vasilinetc, Irina and Prjibelski, Andrey D. and Gurevich, Alexey and
     Korobeynikov, Anton and Pevzner, Pavel A.
-   Title: Assembling short reads from jumping libraries with large insert sizes
+   Title: >
+    Assembling short reads from jumping libraries with large insert sizes
    Journal: Bioinformatics
    Volume: 31
    Number: 20
    Pages: 3262-3268
    Year: 2015
    Month: 06
-   ISSN:  1367-4803
+   ISSN: 1367-4803
    DOI: 10.1093/bioinformatics/btv337
    URL: https://doi.org/10.1093/bioinformatics/btv337
-   eprint: http://oup.prod.sis.lan/bioinformatics/article-pdf/31/20/3262/17087738/btv337.pdf
+   eprint: "http://oup.prod.sis.lan/bioinformatics/article-pdf/\
+    31/20/3262/17087738/btv337.pdf"
  - Author: >
     Antipov, Dmitry and Hartwick, Nolan and Shen, Max and Raiko, Mikhail and
     Lapidus, Alla and Pevzner, Pavel A.
@@ -74,7 +77,8 @@ Reference:
    ISSN: 1367-4803
    DOI: 10.1093/bioinformatics/btw493
    URL: https://doi.org/10.1093/bioinformatics/btw493
-   eprint: http://oup.prod.sis.lan/bioinformatics/article-pdf/32/22/3380/16920848/btw493.pdf
+   eprint: "http://oup.prod.sis.lan/bioinformatics/article-pdf/\
+    32/22/3380/16920848/btw493.pdf"
  - Author: >
     Nurk, Sergey and Meleshko, Dmitry and Korobeynikov, Anton and
     Pevzner, Pavel A.
@@ -92,7 +96,8 @@ Reference:
     Bushmanova, Elena and Antipov, Dmitry and Lapidus, Alla and
     Prjibelski, Andrey D
    Title: >
-    rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
+    rnaSPAdes: a de novo transcriptome assembler and its application to
+    RNA-Seq data
    Journal: GigaScience
    Volume: 8
    Number: 9
@@ -101,17 +106,21 @@ Reference:
    ISSN: 2047-217X
    DOI: 10.1093/gigascience/giz100
    URL: https://doi.org/10.1093/gigascience/giz100
-   eprint: http://oup.prod.sis.lan/gigascience/article-pdf/8/9/giz100/29533229/giz100.pdf
+   eprint: "http://oup.prod.sis.lan/gigascience/article-pdf/\
+    8/9/giz100/29533229/giz100.pdf"
  - Author: >
     Meleshko, Dmitry and Mohimani, Hosein and Traccana, Vittorio and
     Hajirasouliha, Iman and Medema, Marnix H and Korobeynikov, Anton and
     Pevzner, Pavel A
    Title: >
-    BiosyntheticSPAdes: Reconstructing Biosynthetic Gene Clusters From Assembly Graphs
+    BiosyntheticSPAdes: Reconstructing Biosynthetic Gene Clusters From
+    Assembly Graphs
    Year: 2019
    DOI: 10.1101/gr.243477.118
-   URL: http://genome.cshlp.org/content/early/2019/06/03/gr.243477.118.abstract
-   eprint: http://genome.cshlp.org/content/early/2019/06/03/gr.243477.118.full.pdf+html
+   URL: >
+    http://genome.cshlp.org/content/early/2019/06/03/gr.243477.118.abstract
+   eprint: "http://genome.cshlp.org/content/early/\
+    2019/06/03/gr.243477.118.full.pdf+html"
    Journal: Genome Research
 Registry:
  - Name: SciCrunch



View it on GitLab: https://salsa.debian.org/med-team/spades/-/commit/a07eb14235f3c37ac950da505d36a714c8821c88

-- 
View it on GitLab: https://salsa.debian.org/med-team/spades/-/commit/a07eb14235f3c37ac950da505d36a714c8821c88
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