Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a3899469 by Andreas Tille at 2020-03-19T13:44:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,100 +1,90 @@
-Last-Update: Thu, 19 Mar 2020 01:42:03 +0000
+Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {imaging} |
- orthanc | 103 | {practice,imaging} |
- gdcm | 44 | {imaging-dev} |
- orthanc-wsi | 42 | {his,imaging,oncology,practice,laboratory} |
+ dcmtk | 175 | {imaging} |
+ orthanc | 102 | {imaging,practice} |
+ gdcm | 46 | {imaging-dev} |
+ orthanc-wsi | 42 | {laboratory,practice,oncology,his,imaging} |
htsjdk | 36 | {bio-dev} |
amide | 34 | {imaging} |
- dicomscope | 31 | {imaging} |
- dcm2niix | 29 | {imaging} |
+ dicomscope | 29 | {imaging} |
+ dcm2niix | 28 | {imaging} |
dicom3tools | 26 | {imaging} |
gnumed-server | 20 | {practice} |
pixelmed | 18 | {imaging} |
gdcm | 17 | {imaging} |
- adun.app | 16 | {bio} |
- biojava-live | 16 | {bio-dev} |
- king | 16 | {typesetting,imaging} |
minc-tools | 16 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
- insighttoolkit4 | 15 | {imaging-dev} |
+ adun.app | 15 | {bio} |
+ biojava-live | 15 | {bio-dev} |
invesalius | 15 | {imaging} |
+ king | 15 | {imaging,typesetting} |
openslide | 15 | {imaging} |
+ insighttoolkit4 | 14 | {imaging-dev} |
psychopy | 14 | {psychology} |
- tree-puzzle | 14 | {bio,cloud,bio-phylogeny} |
- jebl2 | 13 | {bio-dev} |
+ tree-puzzle | 13 | {bio-phylogeny,bio,cloud} |
vtk-dicom | 13 | {imaging} |
- librg-utils-perl | 12 | {bio} |
+ jebl2 | 12 | {bio-dev} |
ncbi-entrez-direct | 12 | {bio} |
- norsp | 12 | {bio} |
plastimatch | 12 | {imaging} |
- fastlink | 11 | {bio,cloud} |
- melting | 11 | {bio,cloud} |
- mipe | 11 | {cloud,bio} |
- ncbi-seg | 11 | {bio} |
+ librg-utils-perl | 11 | {bio} |
+ norsp | 11 | {bio} |
radiant | 11 | {bio} |
- staden | 11 | {bio} |
- ampliconnoise | 10 | {bio,cloud} |
- arden | 10 | {bio,cloud} |
biosig4c++ | 10 | {imaging,physics} |
diamond-aligner | 10 | {bio} |
- maqview | 10 | {bio} |
+ fastlink | 10 | {bio,cloud} |
+ melting | 10 | {cloud,bio} |
mia | 10 | {imaging} |
- phyutility | 10 | {cloud,bio} |
- sigma-align | 10 | {bio-phylogeny,cloud,bio} |
+ mipe | 10 | {bio,cloud} |
+ ncbi-seg | 10 | {bio} |
sortmerna | 10 | {bio} |
- anfo | 9 | {cloud,bio} |
- dazzdb | 9 | {bio} |
+ staden | 10 | {bio} |
+ ampliconnoise | 9 | {bio,cloud} |
+ arden | 9 | {cloud,bio} |
ecopcr | 9 | {bio} |
- edtsurf | 9 | {bio} |
- embassy-domainatrix | 9 | {cloud,bio} |
- embassy-domalign | 9 | {cloud,bio} |
- embassy-domsearch | 9 | {cloud,bio} |
- freecontact | 9 | {cloud,bio} |
- idba | 9 | {bio,cloud} |
jaligner | 9 | {bio} |
+ maqview | 9 | {bio} |
mauve-aligner | 9 | {bio} |
- neobio | 9 | {cloud,bio} |
ngs-sdk | 9 | {bio-dev} |
obitools | 9 | {bio} |
paml | 9 | {bio} |
- paraclu | 9 | {cloud,bio} |
- perm | 9 | {cloud,bio} |
+ phyutility | 9 | {bio,cloud} |
piler | 9 | {bio} |
- prime-phylo | 9 | {cloud,bio} |
- probabel | 9 | {cloud,bio} |
- sibsim4 | 9 | {bio,cloud} |
+ sigma-align | 9 | {bio-phylogeny,cloud,bio} |
+ anfo | 8 | {cloud,bio} |
biomaj3-cli | 8 | {cloud} |
bio-tradis | 8 | {bio-dev,bio} |
bppsuite | 8 | {bio} |
cgview | 8 | {bio} |
codonw | 8 | {bio} |
daligner | 8 | {bio-ngs,bio} |
+ dazzdb | 8 | {bio} |
ea-utils | 8 | {bio} |
+ edtsurf | 8 | {bio} |
+ embassy-domainatrix | 8 | {cloud,bio} |
+ embassy-domalign | 8 | {bio,cloud} |
+ embassy-domsearch | 8 | {cloud,bio} |
estscan | 8 | {bio} |
- gasic | 8 | {bio,cloud} |
+ freecontact | 8 | {cloud,bio} |
gdcm | 8 | {imaging-dev} |
- ipig | 8 | {bio} |
+ idba | 8 | {bio,cloud} |
king-probe | 8 | {bio} |
lagan | 8 | {bio} |
+ libminc | 8 | {imaging-dev} |
lucy | 8 | {bio} |
- mapsembler2 | 8 | {cloud,bio} |
microbegps | 8 | {bio} |
- mlv-smile | 8 | {cloud,bio} |
+ neobio | 8 | {bio,cloud} |
+ paraclu | 8 | {bio,cloud} |
+ perm | 8 | {cloud,bio} |
phast | 8 | {bio} |
placnet | 8 | {bio} |
poretools | 8 | {bio} |
- predictprotein | 8 | {bio} |
- proalign | 8 | {bio,bio-phylogeny} |
- saint | 8 | {bio} |
+ prime-phylo | 8 | {bio,cloud} |
+ probabel | 8 | {bio,cloud} |
seqsero | 8 | {bio} |
- squizz | 8 | {bio,cloud} |
- transtermhp | 8 | {bio} |
+ sibsim4 | 8 | {bio,cloud} |
treeview | 8 | {bio-phylogeny,bio} |
- zalign | 8 | {bio,cloud} |
- abacas | 7 | {bio} |
alter-sequence-alignment | 7 | {bio} |
assemblytics | 7 | {bio} |
baitfisher | 7 | {bio} |
@@ -103,30 +93,42 @@ Last-Update: Thu, 19 Mar 2020 01:42:03 +0000
canu | 7 | {bio} |
centrifuge | 7 | {bio} |
dascrubber | 7 | {bio} |
+ dicompyler | 7 | {oncology} |
elph | 7 | {bio} |
- fitgcp | 7 | {bio,cloud} |
freebayes | 7 | {bio} |
+ gasic | 7 | {bio,cloud} |
harvest-tools | 7 | {bio} |
indelible | 7 | {bio} |
+ ipig | 7 | {bio} |
lamarc | 7 | {bio} |
libncl | 7 | {bio} |
- mhap | 7 | {bio,bio-ngs} |
+ mapsembler2 | 7 | {cloud,bio} |
+ mhap | 7 | {bio-ngs,bio} |
+ mlv-smile | 7 | {bio,cloud} |
+ predictprotein | 7 | {bio} |
+ proalign | 7 | {bio-phylogeny,bio} |
pscan-chip | 7 | {bio} |
pscan-tfbs | 7 | {bio} |
rdp-readseq | 7 | {bio} |
+ saint | 7 | {bio} |
scythe | 7 | {bio} |
seqtools | 7 | {bio} |
sickle | 7 | {bio} |
- spread-phy | 7 | {bio-phylogeny,bio} |
+ spread-phy | 7 | {bio,bio-phylogeny} |
+ squizz | 7 | {cloud,bio} |
+ transtermhp | 7 | {bio} |
vsearch | 7 | {bio} |
+ zalign | 7 | {bio,cloud} |
+ abacas | 6 | {bio} |
andi | 6 | {bio} |
bandage | 6 | {bio} |
beads | 6 | {bio} |
bio-rainbow | 6 | {bio} |
clonalframeml | 6 | {bio} |
clonalorigin | 6 | {bio} |
- dicompyler | 6 | {oncology} |
+ delly | 6 | {bio} |
dwgsim | 6 | {bio} |
+ fitgcp | 6 | {cloud,bio} |
gatb-core | 6 | {bio} |
ghmm | 6 | {bio} |
hinge | 6 | {bio} |
@@ -150,16 +152,15 @@ Last-Update: Thu, 19 Mar 2020 01:42:03 +0000
seqtools | 6 | {bio} |
sprai | 6 | {bio} |
tracetuner | 6 | {bio} |
- velvetoptimiser | 6 | {bio} |
- beast-mcmc | 5 | {bio-phylogeny,bio} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-daemon | 5 | {bio} |
brig | 5 | {bio} |
cluster3 | 5 | {bio} |
- delly | 5 | {bio} |
dindel | 5 | {bio} |
elastix | 5 | {imaging} |
fastml | 5 | {bio} |
fsm-lite | 5 | {bio} |
+ hunspell-en-med | 5 | {tools} |
jmodeltest | 5 | {bio,bio-phylogeny} |
logol | 5 | {bio} |
pbdagcon | 5 | {bio} |
@@ -171,7 +172,6 @@ Last-Update: Thu, 19 Mar 2020 01:42:03 +0000
rdp-alignment | 5 | {bio} |
relion | 5 | {bio} |
roguenarok | 5 | {bio} |
- rtax | 5 | {cloud,bio} |
runcircos-gui | 5 | {bio} |
salmon | 5 | {bio} |
samblaster | 5 | {bio} |
@@ -181,12 +181,15 @@ Last-Update: Thu, 19 Mar 2020 01:42:03 +0000
sweed | 5 | {bio} |
transrate-tools | 5 | {bio} |
tvc | 5 | {bio} |
+ velvetoptimiser | 5 | {bio} |
yaha | 5 | {bio} |
blasr | 4 | {bio-ngs,bio} |
igor | 4 | {bio} |
metaphlan2 | 4 | {bio} |
+ openslide | 4 | {imaging-dev} |
parsnp | 4 | {bio} |
qcumber | 4 | {bio} |
+ rtax | 4 | {cloud,bio} |
segemehl | 4 | {bio} |
seqmagick | 4 | {bio} |
sga | 4 | {bio} |
@@ -197,24 +200,19 @@ Last-Update: Thu, 19 Mar 2020 01:42:03 +0000
surankco | 4 | {bio} |
bart-view | 3 | {imaging} |
getdata | 3 | {bio} |
- hunspell-en-med | 3 | {tools} |
kma | 3 | {bio} |
kmerresistance | 3 | {bio} |
libgff | 3 | {bio-dev} |
- libminc | 3 | {imaging-dev} |
libsmithwaterman | 3 | {bio} |
mrs | 3 | {bio} |
nanook | 3 | {bio} |
- openslide | 3 | {imaging-dev} |
orthanc-dicomweb | 3 | {imaging} |
qrisk2 | 3 | {practice} |
- relion | 3 | {bio} |
scrm | 3 | {bio} |
skesa | 3 | {bio} |
spaced | 3 | {bio} |
tnseq-transit | 3 | {bio} |
varscan | 3 | {bio} |
- acedb | 2 | {bio,cloud} |
biosig4c++ | 2 | {physics,imaging-dev} |
ctn | 2 | {imaging-dev} |
cufflinks | 2 | {cloud,bio} |
@@ -222,11 +220,13 @@ Last-Update: Thu, 19 Mar 2020 01:42:03 +0000
orthanc-mysql | 2 | {imaging} |
pal2nal | 2 | {bio} |
pilercr | 2 | {bio} |
+ relion | 2 | {bio} |
srf | 2 | {bio-dev} |
stringtie | 2 | {bio} |
trace2dbest | 2 | {bio} |
- tree-puzzle | 2 | {cloud,bio,bio-phylogeny} |
+ tree-puzzle | 2 | {bio,cloud,bio-phylogeny} |
volpack | 2 | {imaging-dev} |
+ acedb | 1 | {cloud,bio} |
atropos | 1 | {bio} |
biosig4c++ | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
@@ -250,7 +250,7 @@ Last-Update: Thu, 19 Mar 2020 01:42:03 +0000
thesias | 1 | {bio} |
vtk-dicom | 1 | {imaging-dev} |
bambamc | 0 | {bio-dev} |
- biobambam2 | 0 | {bio-dev,bio} |
+ biobambam2 | 0 | {bio,bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
@@ -296,7 +296,7 @@ Last-Update: Thu, 19 Mar 2020 01:42:03 +0000
ngs-sdk | 0 | {bio-dev} |
nutsqlite | 0 | {tools} |
orthanc-imagej | 0 | {imaging} |
- oscar | 0 | {data,tools,practice} |
+ oscar | 0 | {practice,data,tools} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
python-deeptools | 0 | {bio,bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,108 +1,86 @@
-Last-Update: Thu, 19 Mar 2020 01:42:03 +0000
+Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
- source | version | upstream_version | uploaders | Last uploader | Last uploaded
--------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+------------------------+------------------------
- andi | 0.12 | 0.13 | Fabian Klötzl | Andreas Tille | 2018-10-27 17:50:30+00
- artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
- atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
- baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
- beagle | 5.1-191125 | 200313 | Dylan Aïssi | Dylan Aïssi | 2019-12-14 18:34:10+00
- beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
- biobambam2 | 2.0.153 | 2.0.158+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
- biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00
- biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
- biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
- biomaj3-download | 3.1.0 | 3.1.2 | Olivier Sallou | Olivier Sallou | 2019-11-12 13:19:24+00
- biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
- biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
- bowtie2 | 2.3.5.1 | 2.4.1 | Alexandre Mestiashvili,Andreas Tille | Michael R. Crusoe | 2019-12-19 16:34:16+00
- charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00
- ctdopts | 1.2 | 1.3 | Michael R. Crusoe | Michael R. Crusoe | 2018-02-28 12:34:26+00
- cwltool | 2.0.20200224214940 | 2.0.20200312183052 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
- dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00
- ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
- edfbrowser | 1.72 | 1.73 | Andreas Tille | Andreas Tille | 2020-02-14 15:02:37+00
- elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00
- epigrass | 2.5.0 | 2.6.0 | Andreas Tille,Thorsten Alteholz | Andreas Tille | 2019-09-13 19:48:50+00
- falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00
- fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
- gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
- gdcm | 3.0.4 | 3.0.5 | Gert Wollny,Sébastien Jodogne,Steve M. Robbins | Gert Wollny | 2019-11-07 11:49:02+00
- gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
- hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
- htsjdk | 2.18.2 | 2.21.3 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00
- hyphy | 2.5.1 | 2.5.6 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
- igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
- igraph | 0.8.0 | 0.8.1 | Andreas Tille | Andreas Tille | 2020-03-14 20:10:56+00
- igv | 2.4.17 | 2.8.1 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
- imagej | 1.52r | 1.52t | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
- ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
- jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
- kallisto | 0.46.1 | 0.46.2 | Andreas Tille | Michael R. Crusoe | 2019-12-27 07:19:20+00
- kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20190618.0ac41a0 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
- king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
- libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
- libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
- libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200313.db8cd8f | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
- libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
- metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
- mmseqs2 | 10-6d92c | 11-e1a1c | Shayan Doust | Andreas Tille | 2020-02-11 22:38:56+00
- mothur | 1.42.1 | 1.43.0 | Andreas Tille,Steffen Moeller,Tomasz Buchert | Andreas Tille | 2019-08-01 19:09:05+00
- mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
- nanopolish | 0.11.3 | 0.12.1 | Andreas Tille | Steffen Moeller | 2019-12-22 12:49:21+00
- ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
- ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
- ngs-sdk | 2.10.2 | 2.10.4 | Andreas Tille,Olivier Sallou,Vincent Danjean | Michael R. Crusoe | 2020-02-17 15:36:45+00
- nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
- pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
- pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
- pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00
- picard-tools | 2.18.25 | 2.22.0 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
- plink2 | 2.00~a3-200217 | 200311 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
- prokka | 1.14.5 | 1.14.6 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-04 11:00:31+00
- pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
- python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
- python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
- python-cobra | 0.14.2 | 0.17.1 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
- python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
- python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200313.2a40099 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
- python-pbcore | 1.7.1+git20200206.d66cbbf | 1.7.1+git20200313.41ba394 | Andreas Tille | Andreas Tille | 2020-02-25 08:42:20+00
- python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
- python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
- python-treetime | 0.7.1 | 0.7.4 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00
- q2cli | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-16 10:20:08+00
- q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
- q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
- q2-feature-classifier | 2019.4.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00
- q2-feature-table | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:49:21+00
- q2-metadata | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-02-03 08:42:28+00
- q2-quality-filter | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:49+00
- q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
- q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00
- qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
- racon | 1.4.10 | 1.4.11 | Andreas Tille,Cédric Lood | Michael R. Crusoe | 2019-11-12 17:22:24+00
- relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
- resfinder-db | 0.0+git20191001.149209d | 0.0+git20200213.2a8dd7f | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
- salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
- scrm | 1.7.3 | 1.7.4 | Kevin Murray | Andreas Tille | 2018-12-17 13:05:34+00
- seaview | 4.7 | 5.0.1 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
- simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00
- simpleitk | 1.0.1 | 1.2.0 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:06:08+00
- skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00
- snakemake | 5.10.0 | 5.11.1 | Kevin Murray | Alexandre Mestiashvili | 2020-02-11 12:50:42+00
- spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
- spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00
- sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
- stacks | 2.41 | 2.52 | Andreas Tille,Tim Booth | Andreas Tille | 2019-07-12 19:11:30+00
- sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
- t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
- tnseq-transit | 3.0.2 | 3.1.0 | Andreas Tille | Steffen Moeller | 2020-01-18 22:25:05+00
- unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
- vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
- xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(100 rows)
+ source | version | upstream_version | uploaders | Last uploader | Last uploaded
+-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+------------------------+------------------------
+ andi | 0.12 | 0.13 | Fabian Klötzl | Andreas Tille | 2018-10-27 17:50:30+00
+ artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
+ atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
+ baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
+ beagle | 5.1-191125 | 200313 | Dylan Aïssi | Dylan Aïssi | 2019-12-14 18:34:10+00
+ biobambam2 | 2.0.153 | 2.0.158+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
+ biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
+ biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
+ biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
+ biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
+ bowtie2 | 2.3.5.1 | 2.4.1 | Alexandre Mestiashvili,Andreas Tille | Michael R. Crusoe | 2019-12-19 16:34:16+00
+ cwltool | 2.0.20200224214940 | 2.0.20200312183052 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
+ ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
+ edfbrowser | 1.72 | 1.73 | Andreas Tille | Andreas Tille | 2020-02-14 15:02:37+00
+ fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
+ gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
+ gdcm | 3.0.4 | 3.0.5 | Gert Wollny,Sébastien Jodogne,Steve M. Robbins | Gert Wollny | 2019-11-07 11:49:02+00
+ gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
+ hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
+ hyphy | 2.5.1 | 2.5.6 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
+ igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
+ igv | 2.4.17 | 2.8.1 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
+ imagej | 1.52r | 1.52t | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
+ ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
+ jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
+ kallisto | 0.46.1 | 0.46.2 | Andreas Tille | Michael R. Crusoe | 2019-12-27 07:19:20+00
+ kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20190618.0ac41a0 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
+ king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
+ libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
+ libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
+ libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200318.6fef1b7 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
+ libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
+ metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
+ mothur | 1.42.1 | 1.43.0 | Andreas Tille,Steffen Moeller,Tomasz Buchert | Andreas Tille | 2019-08-01 19:09:05+00
+ mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
+ nanopolish | 0.11.3 | 0.12.2 | Andreas Tille | Steffen Moeller | 2019-12-22 12:49:21+00
+ ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
+ ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
+ ngs-sdk | 2.10.2 | 2.10.4 | Andreas Tille,Olivier Sallou,Vincent Danjean | Michael R. Crusoe | 2020-02-17 15:36:45+00
+ nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
+ pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
+ pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
+ pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00
+ plink2 | 2.00~a3-200217 | 200311 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
+ python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
+ python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200313.2a40099 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
+ python-pbcore | 1.7.1+git20200206.d66cbbf | 1.7.1+git20200313.41ba394 | Andreas Tille | Andreas Tille | 2020-02-25 08:42:20+00
+ python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
+ q2cli | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-16 10:20:08+00
+ q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
+ q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
+ q2-feature-classifier | 2019.4.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00
+ q2-feature-table | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:49:21+00
+ q2-metadata | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-02-03 08:42:28+00
+ q2-quality-filter | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:49+00
+ q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
+ q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00
+ qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
+ relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
+ resfinder-db | 0.0+git20191001.149209d | 0.0+git20200213.2a8dd7f | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
+ salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
+ samblaster | 0.1.24 | 0.1.25 | Steffen Moeller | Andreas Tille | 2019-01-22 08:49:17+00
+ seaview | 4.7 | 5.0.1 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
+ simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00
+ skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00
+ snakemake | 5.10.0 | 5.11.1 | Kevin Murray | Alexandre Mestiashvili | 2020-02-11 12:50:42+00
+ spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
+ spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00
+ sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
+ stacks | 2.41 | 2.52 | Andreas Tille,Tim Booth | Andreas Tille | 2019-07-12 19:11:30+00
+ sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
+ t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
+ tnseq-transit | 3.0.2 | 3.1.0 | Andreas Tille | Steffen Moeller | 2020-01-18 22:25:05+00
+ vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
+ xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
+(78 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a38994694c732355af821f4860728afc7a94aa56
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a38994694c732355af821f4860728afc7a94aa56
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