[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Fri Mar 20 01:44:43 GMT 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
134775f4 by Andreas Tille at 2020-03-20T01:44:35+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
+Last-Update: Fri, 20 Mar 2020 01:42:03 +0000
 
  Source                        | Vote   | Tasks                                      |                                 Tags                                 
 -------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------


=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
+Last-Update: Fri, 20 Mar 2020 01:42:03 +0000
 
  source                        |             version             |        upstream_version         |                      uploaders                                            |  Last uploader         |     Last uploaded      
 -------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+------------------------+------------------------
@@ -153,7 +153,6 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
  gentle                        | 732691 | normal    | Pressing "alignment or Ctrl+G"   only results in a dialog with a  cancel button
  ghmm                          | 936609 | normal    | ghmm: Python2 removal in sid/bullseye
  harvest-tools                 | 943055 | normal    | harvest-tools: Python2 removal in sid/bullseye
- hinge                         | 952615 | serious   | hinge: FTBFS: fmt.h:22:10: fatal error: spdlog/fmt/bundled/core.h: No such file or directory
  htsjdk                        | 877590 | normal    | FTBFS: error: package org.testng does not exist
  htsjdk                        | 920588 | normal    | htsjdk: Autopkgtest for htsjdk
  htslib                        | 922860 | normal    | Packages do not contain the upstream README file
@@ -172,6 +171,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
  khmer                         | 851830 | minor     | arm64 has flaky tests
  kineticstools                 | 936797 | serious   | kineticstools: Python2 removal in sid/bullseye
  kissplice                     | 936798 | normal    | kissplice: Python2 removal in sid/bullseye
+ kmc                           | 954270 | important | kmc: arm64 autopkgtest time out
  kmer                          | 936802 | normal    | kmer: Python2 removal in sid/bullseye
  lambda-align2                 | 953081 | grave     | lambda-align2: empty package on !amd64
  libgtextutils                 | 925745 | serious   | libgtextutils: ftbfs with GCC-9
@@ -229,6 +229,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
  psychopy                      | 829424 | normal    | psychopy: ioHub uses inappropriate PID file location
  psychopy                      | 953052 | important | psychopy: python2 dependencies
  psychopy                      | 953053 | important | psychopy: missing python3 dependencies
+ pybel                         | 954253 | serious   | python3-pybel: Missing dependency on unpackaged bel_resources
  pynast                        | 937488 | normal    | pynast: Python2 removal in sid/bullseye
  pynast                        | 948081 | serious   | pynast build depends on and recommends the removed blast2 transitional package
  python-biom-format            | 820060 | normal    | python-biom-format: broken on big-endian architectures
@@ -258,6 +259,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
  sambamba                      | 948919 | serious   | sambamba FTBFS: undefined reference to 'cram_to_bam'
  seqan2                        | 892222 | normal    | seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta
  seqan2                        | 917851 | important | seqan2 2.4.0+dfsg-9: FTBFS, alignment problem
+ simka                         | 954273 | important | simka: arm64 autopkgtest time out
  simpleitk                     | 949355 | serious   | simpleitk FTBFS: test failures
  skesa                         | 952627 | serious   | skesa: FTBFS: ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'
  snakemake                     | 943956 | wishlist  | snakemake: please make the build reproducible
@@ -273,6 +275,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
  sra-sdk                       | 943231 | normal    | sra-sdk: Python2 removal in sid/bullseye
  sra-sdk                       | 952623 | serious   | sra-sdk: FTBFS: ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'
  sumaclust                     | 952093 | serious   | sumaclust: FTBFS: mtcompare_sumaclust.c:18:10: fatal error: libfasta/sequence.h: No such file or directory
+ sumaclust                     | 954262 | serious   | src:sumaclust: fails to migrate to testing for too long
  tree-puzzle                   | 806214 | normal    | tree-puzzle: Package fails test suite
  tree-puzzle                   | 890790 | minor     | tree-puzzle: Please provide autopkgtest
  tree-puzzle                   | 951984 | serious   | tree-puzzle: FTBFS: mpi.h:322:57: error: static assertion failed: "MPI_Address was removed in MPI-3.0.  Use MPI_Get_address instead."
@@ -283,5 +286,5 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
  xmedcon                       | 671828 | normal    | xmedcon: Cannot open file with YBR photometric interpretation
  xmedcon                       | 779707 | normal    | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
  xmedcon                       | 924017 | normal    | desktop entry
-(198 rows)
+(201 rows)
 



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/134775f49d9aaba84cffc48f4b03d695be298067

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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/134775f49d9aaba84cffc48f4b03d695be298067
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