[med-svn] [Git][med-team/diamond-aligner][upstream] New upstream version 0.9.31

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / diamond-aligner


Commits:
279269cf by Andreas Tille at 2020-03-20T19:26:19+01:00
New upstream version 0.9.31
- - - - -


30 changed files:

- CMakeLists.txt
- src/ChangeLog
- src/align/align.cpp
- src/align/align.h
- src/align/culling.cpp
- src/align/extend.cpp
- src/align/extend.h
- src/align/extend_ungapped.h
- src/align/gapped.cpp
- src/align/legacy/banded_swipe_pipeline.cpp
- − src/align/legacy/greedy_pipeline.cpp
- src/align/legacy/query_mapper.cpp
- src/align/legacy/query_mapper.h
- src/align/output.cpp
- src/align/target.h
- src/align/ungapped.cpp
- src/basic/basic.cpp
- src/basic/config.cpp
- src/basic/config.h
- src/basic/const.h
- src/basic/diagonal_segment.h
- src/basic/hssp.cpp
- src/basic/masking.cpp
- src/basic/match.h
- + src/basic/matrix_tables.cpp
- src/basic/reduction.h
- src/basic/score_matrix.cpp
- src/basic/score_matrix.h
- src/basic/seed_iterator.h
- src/basic/sequence.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/commit/279269cf173ff403470289d94d9e0125713e35be

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View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/commit/279269cf173ff403470289d94d9e0125713e35be
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