[med-svn] [Git][med-team/nanopolish][master] 8 commits: New upstream version 0.12.1

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / nanopolish


Commits:
c9945745 by Steffen Moeller at 2020-03-14T15:57:59+01:00
New upstream version 0.12.1
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6abd19a1 by Steffen Moeller at 2020-03-14T15:57:59+01:00
routine-update: New upstream version

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d6fe0d12 by Steffen Moeller at 2020-03-14T15:58:11+01:00
Update upstream source from tag 'upstream/0.12.1'

Update to upstream version '0.12.1'
with Debian dir b14e4b42365b26daba4d547581e9f6825213069b
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6855172e by Steffen Moeller at 2020-03-14T15:58:11+01:00
routine-update: Standards-Version: 4.5.0

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785f7160 by Steffen Moeller at 2020-03-14T15:58:15+01:00
routine-update: Add salsa-ci file

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7e4fe7dc by Steffen Moeller at 2020-03-14T15:58:15+01:00
routine-update: Rules-Requires-Root: no

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67c1ab62 by Steffen Moeller at 2020-03-14T15:58:16+01:00
Set upstream metadata fields: Bug-Submit.
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37e07484 by Steffen Moeller at 2020-03-26T02:51:58+01:00
New upstream release, upgrade to minimap2

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30 changed files:

- .gitmodules
- .travis.yml
- Makefile
- README.md
- debian/changelog
- debian/control
- debian/patches/series
- + debian/patches/staticMinimap2Library.patch
- debian/rules
- + debian/salsa-ci.yml
- debian/upstream/metadata
- scripts/calculate_methylation_frequency.py
- scripts/convert_model_to_header.py
- + scripts/requirements.txt
- src/alignment/nanopolish_alignment_db.cpp
- src/alignment/nanopolish_alignment_db.h
- src/common/nanopolish_common.cpp
- src/common/nanopolish_common.h
- src/common/nanopolish_variant.cpp
- src/common/nanopolish_variant.h
- src/common/progress.h
- src/common/nanopolish_fast5_io.cpp → src/io/nanopolish_fast5_io.cpp
- src/common/nanopolish_fast5_io.h → src/io/nanopolish_fast5_io.h
- + src/io/nanopolish_fast5_loader.cpp
- + src/io/nanopolish_fast5_loader.h
- + src/io/nanopolish_fast5_processor.cpp
- + src/io/nanopolish_fast5_processor.h
- src/nanopolish_call_methylation.cpp
- src/nanopolish_call_variants.cpp
- src/nanopolish_index.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/compare/14cc1848d6ae867c6ccae4355afec8402ec2f59f...37e0748472d36e59397f8723134fa29f2ba9ce0b

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View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/compare/14cc1848d6ae867c6ccae4355afec8402ec2f59f...37e0748472d36e59397f8723134fa29f2ba9ce0b
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