[med-svn] [Git][med-team/nanopolish][upstream] New upstream version 0.12.1

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / nanopolish


Commits:
c9945745 by Steffen Moeller at 2020-03-14T15:57:59+01:00
New upstream version 0.12.1
- - - - -


30 changed files:

- .gitmodules
- .travis.yml
- Makefile
- README.md
- scripts/calculate_methylation_frequency.py
- scripts/convert_model_to_header.py
- + scripts/requirements.txt
- src/alignment/nanopolish_alignment_db.cpp
- src/alignment/nanopolish_alignment_db.h
- src/common/nanopolish_common.cpp
- src/common/nanopolish_common.h
- src/common/nanopolish_variant.cpp
- src/common/nanopolish_variant.h
- src/common/progress.h
- src/common/nanopolish_fast5_io.cpp → src/io/nanopolish_fast5_io.cpp
- src/common/nanopolish_fast5_io.h → src/io/nanopolish_fast5_io.h
- + src/io/nanopolish_fast5_loader.cpp
- + src/io/nanopolish_fast5_loader.h
- + src/io/nanopolish_fast5_processor.cpp
- + src/io/nanopolish_fast5_processor.h
- src/nanopolish_call_methylation.cpp
- src/nanopolish_call_variants.cpp
- src/nanopolish_index.cpp
- src/nanopolish_read_db.cpp
- src/nanopolish_read_db.h
- src/nanopolish_squiggle_read.cpp
- src/nanopolish_squiggle_read.h
- src/nanopolish_variant_db.cpp
- src/nanopolish_variant_db.h
- src/test/nanopolish_test.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/commit/c99457450e229c51dee848625a7a8d8bf248f64f

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View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/commit/c99457450e229c51dee848625a7a8d8bf248f64f
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