Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
0940b74b by Andreas Tille at 2020-03-26T13:45:05+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,315 +1,320 @@
-Last-Update: Thu, 26 Mar 2020 01:42:03 +0000
+Last-Update: Thu, 26 Mar 2020 13:42:04 +0000
- Source | Vote | Tasks | Tags
--------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 166 | {imaging} |
- orthanc | 100 | {imaging,practice} |
- gdcm | 48 | {imaging-dev} |
- orthanc-wsi | 43 | {his,laboratory,oncology,practice,imaging} |
- amide | 35 | {imaging} |
- htsjdk | 34 | {bio-dev} |
- dcm2niix | 31 | {imaging} |
- dicomscope | 28 | {imaging} |
- dicom3tools | 25 | {imaging} |
- gnumed-server | 18 | {practice} |
- pixelmed | 18 | {imaging} |
- invesalius | 17 | {imaging} |
- minc-tools | 17 | {imaging} |
- ngs-sdk | 17 | {bio-dev} |
- gdcm | 16 | {imaging} |
- openslide | 16 | {imaging} |
- biojava-live | 14 | {bio-dev} |
- king | 14 | {imaging,typesetting} |
- vtk-dicom | 14 | {imaging} |
- insighttoolkit4 | 13 | {imaging-dev} |
- ncbi-entrez-direct | 13 | {bio} |
- adun.app | 12 | {bio} |
- psychopy | 12 | {psychology} |
- cgview | 11 | {bio} |
- mia | 11 | {imaging} |
- plastimatch | 11 | {imaging} |
- staden | 11 | {bio} |
- tree-puzzle | 11 | {bio-phylogeny,cloud,bio} |
- biosig4c++ | 10 | {imaging,physics} |
- diamond-aligner | 10 | {bio} |
- ea-utils | 10 | {bio} |
- jebl2 | 10 | {bio-dev} |
- king-probe | 10 | {bio} |
- librg-utils-perl | 10 | {bio} |
- norsp | 10 | {bio} |
- radiant | 10 | {bio} |
- bppsuite | 9 | {bio} |
- dazzdb | 9 | {bio} |
- fastlink | 9 | {cloud,bio} |
- gdcm | 9 | {imaging-dev} |
- mipe | 9 | {cloud,bio} |
- ncbi-seg | 9 | {bio} |
- obitools | 9 | {bio} |
- paml | 9 | {bio} |
- ampliconnoise | 8 | {bio,cloud} |
- arden | 8 | {cloud,bio} |
- biomaj3-cli | 8 | {cloud} |
- ecopcr | 8 | {bio} |
- freecontact | 8 | {cloud,bio} |
- hunspell-en-med | 8 | {tools} |
- maqview | 8 | {bio} |
- mauve-aligner | 8 | {bio} |
- melting | 8 | {bio,cloud} |
- neobio | 8 | {cloud,bio} |
- ngs-sdk | 8 | {bio-dev} |
- phast | 8 | {bio} |
- phyutility | 8 | {bio,cloud} |
- piler | 8 | {bio} |
- prime-phylo | 8 | {cloud,bio} |
- pscan-tfbs | 8 | {bio} |
- sigma-align | 8 | {cloud,bio,bio-phylogeny} |
- abacas | 7 | {bio} |
- alter-sequence-alignment | 7 | {bio} |
- anfo | 7 | {cloud,bio} |
- bio-tradis | 7 | {bio,bio-dev} |
- bitseq | 7 | {bio} |
- codonw | 7 | {bio} |
- daligner | 7 | {bio,bio-ngs} |
- edtsurf | 7 | {bio} |
- embassy-domainatrix | 7 | {cloud,bio} |
- estscan | 7 | {bio} |
- fitgcp | 7 | {cloud,bio} |
- freebayes | 7 | {bio} |
- jaligner | 7 | {bio} |
- lagan | 7 | {bio} |
- lamarc | 7 | {bio} |
- lucy | 7 | {bio} |
- microbegps | 7 | {bio} |
- paraclu | 7 | {cloud,bio} |
- perm | 7 | {bio,cloud} |
- placnet | 7 | {bio} |
- poretools | 7 | {bio} |
- predictprotein | 7 | {bio} |
- probabel | 7 | {bio,cloud} |
- saint | 7 | {bio} |
- seqsero | 7 | {bio} |
- seqtools | 7 | {bio} |
- sibsim4 | 7 | {bio,cloud} |
- andi | 6 | {bio} |
- baitfisher | 6 | {bio} |
- beast2-mcmc | 6 | {bio} |
- biomaj3-daemon | 6 | {bio} |
- bio-rainbow | 6 | {bio} |
- canu | 6 | {bio} |
- centrifuge | 6 | {bio} |
- clonalframeml | 6 | {bio} |
- dascrubber | 6 | {bio} |
- dicompyler | 6 | {oncology} |
- elph | 6 | {bio} |
- embassy-domalign | 6 | {bio,cloud} |
- embassy-domsearch | 6 | {cloud,bio} |
- gasic | 6 | {cloud,bio} |
- gatb-core | 6 | {bio} |
- harvest-tools | 6 | {bio} |
- indelible | 6 | {bio} |
- ipig | 6 | {bio} |
- jellyfish1 | 6 | {bio} |
- libminc | 6 | {imaging-dev} |
- libpal-java | 6 | {bio-dev} |
- mapsembler2 | 6 | {bio,cloud} |
- mlv-smile | 6 | {cloud,bio} |
- murasaki | 6 | {bio} |
- orthanc-webviewer | 6 | {imaging} |
- proalign | 6 | {bio,bio-phylogeny} |
- pscan-chip | 6 | {bio} |
- quorum | 6 | {bio} |
- rdp-readseq | 6 | {bio} |
- scythe | 6 | {bio} |
- seqtools | 6 | {bio} |
- sickle | 6 | {bio} |
- spread-phy | 6 | {bio,bio-phylogeny} |
- squizz | 6 | {bio,cloud} |
- tracetuner | 6 | {bio} |
- transtermhp | 6 | {bio} |
- treeview | 6 | {bio,bio-phylogeny} |
- vsearch | 6 | {bio} |
- zalign | 6 | {bio,cloud} |
- assemblytics | 5 | {bio} |
- bandage | 5 | {bio} |
- beads | 5 | {bio} |
- beast-mcmc | 5 | {bio-phylogeny,bio} |
- brig | 5 | {bio} |
- clonalorigin | 5 | {bio} |
- cluster3 | 5 | {bio} |
- dwgsim | 5 | {bio} |
- elastix | 5 | {imaging} |
- ghmm | 5 | {bio} |
- hinge | 5 | {bio} |
- jmodeltest | 5 | {bio,bio-phylogeny} |
- libdivsufsort | 5 | {bio-dev} |
- libncl | 5 | {bio} |
- librdp-taxonomy-tree-java | 5 | {bio-dev} |
- libsbml | 5 | {bio-dev} |
- logol | 5 | {bio} |
- maffilter | 5 | {bio} |
- mhap | 5 | {bio,bio-ngs} |
- mptp | 5 | {bio} |
- openslide | 5 | {imaging-dev} |
- patman | 5 | {bio} |
- phipack | 5 | {bio} |
- prottest | 5 | {bio-phylogeny,bio} |
- pymia | 5 | {imaging-dev} |
- rambo-k | 5 | {bio} |
- rdp-classifier | 5 | {bio} |
- repeatmasker-recon | 5 | {bio} |
- seer | 5 | {bio} |
- sprai | 5 | {bio} |
- tvc | 5 | {bio} |
- blasr | 4 | {bio-ngs,bio} |
- delly | 4 | {bio} |
- dindel | 4 | {bio} |
- fastml | 4 | {bio} |
- fsm-lite | 4 | {bio} |
- metaphlan2 | 4 | {bio} |
- parsnp | 4 | {bio} |
- pbdagcon | 4 | {bio} |
- phybin | 4 | {bio} |
- pilon | 4 | {bio} |
- plasmidseeker | 4 | {bio} |
- rampler | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
- relion | 4 | {bio} |
- roguenarok | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- salmon | 4 | {bio} |
- samblaster | 4 | {bio} |
- sga | 4 | {bio} |
- soapaligner | 4 | {bio} |
- soapsnp | 4 | {bio} |
- sumatra | 4 | {bio} |
- sweed | 4 | {bio} |
- transrate-tools | 4 | {bio} |
- velvetoptimiser | 4 | {bio} |
- yaha | 4 | {bio} |
- bart-view | 3 | {imaging} |
- igor | 3 | {bio} |
- libgff | 3 | {bio-dev} |
- mrs | 3 | {bio} |
- orthanc-dicomweb | 3 | {imaging} |
- orthanc-mysql | 3 | {imaging} |
- relion | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- segemehl | 3 | {bio} |
- seqmagick | 3 | {bio} |
- snap-aligner | 3 | {bio} |
- stacks | 3 | {bio} |
- suitename | 3 | {bio} |
- sumaclust | 3 | {bio} |
- surankco | 3 | {bio} |
- tnseq-transit | 3 | {bio} |
- varscan | 3 | {bio} |
- ctn | 2 | {imaging-dev} |
- cufflinks | 2 | {cloud,bio} |
- getdata | 2 | {bio} |
- kma | 2 | {bio} |
- kmerresistance | 2 | {bio} |
- libsmithwaterman | 2 | {bio} |
- nanook | 2 | {bio} |
- opencfu | 2 | {laboratory} |
- papyrus | 2 | {imaging-dev} |
- qcumber | 2 | {bio} |
- qrisk2 | 2 | {practice} |
- scrm | 2 | {bio} |
- skesa | 2 | {bio} |
- spaced | 2 | {bio} |
- srf | 2 | {bio-dev} |
- tree-puzzle | 2 | {bio-phylogeny,cloud,bio} |
- volpack | 2 | {imaging-dev} |
- acedb | 1 | {bio,cloud} |
- atropos | 1 | {bio} |
- biosig4c++ | 1 | {physics,imaging-dev} |
- blimps | 1 | {bio} |
- edflib | 1 | {imaging-dev} |
- embassy-phylip | 1 | {cloud,bio} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
- libctapimkt | 1 | {practice} |
- libhmsbeagle | 1 | {bio-dev} |
- libsmithwaterman | 1 | {bio-dev} |
- libvistaio | 1 | {imaging-dev} |
- maxflow | 1 | {imaging-dev} |
- mencal | 1 | {tools} |
- ngs-sdk | 1 | {bio-dev} |
- nutsqlite | 1 | {tools} |
- opensurgsim | 1 | {imaging-dev} |
- orthanc-postgresql | 1 | {imaging} |
- pal2nal | 1 | {bio} |
- pilercr | 1 | {bio} |
- ragout | 1 | {bio} |
- samtools-legacy | 1 | {bio-dev} |
- sift | 1 | {bio} |
- stringtie | 1 | {bio} |
- thesias | 1 | {bio} |
- trace2dbest | 1 | {bio} |
- vtk-dicom | 1 | {imaging-dev} |
- bambamc | 0 | {bio-dev} |
- biobambam2 | 0 | {bio-dev,bio} |
- biojava4-live | 0 | {bio-dev} |
- biosig4c++ | 0 | {physics} |
- biosyntax | 0 | {bio} |
- camp | 0 | {imaging-dev} |
- emboss-explorer | 0 | {bio} |
- emmax | 0 | {bio} |
- fasta3 | 0 | {bio} |
- fis-gtm | 0 | {his} |
- freecontact | 0 | {bio-dev} |
- gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {bio-dev} |
- libbiod | 0 | {bio-dev} |
- libbioparser-dev | 0 | {bio-dev} |
- libbpp-core | 0 | {bio-dev} |
- libbpp-phyl | 0 | {bio-dev} |
- libbpp-phyl-omics | 0 | {bio-dev} |
- libbpp-popgen | 0 | {bio-dev} |
- libbpp-raa | 0 | {bio-dev} |
- libbpp-seq | 0 | {bio-dev} |
- libbpp-seq-omics | 0 | {bio-dev} |
- libdisorder | 0 | {bio-dev} |
- libgenome | 0 | {bio-dev} |
- libgkarrays | 0 | {bio-dev} |
- libics | 0 | {imaging-dev} |
- libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev} |
- libmems | 0 | {bio-dev} |
- libmialm | 0 | {imaging-dev} |
- libmuscle | 0 | {bio-dev} |
- libncl | 0 | {bio-dev} |
- libpll | 0 | {bio-dev} |
- libpsortb | 0 | {bio-dev} |
- libqes | 0 | {bio-dev} |
- libseqlib | 0 | {bio-dev} |
- libstatgen | 0 | {bio-dev} |
- libxdf | 0 | {imaging-dev} |
- metastudent-data | 0 | {bio} |
- metastudent-data-2 | 0 | {bio} |
- mia | 0 | {imaging-dev} |
- miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev} |
- mssstest | 0 | {tools} |
- murasaki | 0 | {bio} |
- ncbi-vdb | 0 | {bio-dev} |
- orthanc-imagej | 0 | {imaging} |
- oscar | 0 | {data,practice,tools} |
- pbcopper | 0 | {bio-dev} |
- pbseqlib | 0 | {bio-dev} |
- python-py2bit | 0 | {bio-dev,bio} |
- relion | 0 | {bio-dev} |
- relion | 0 | {bio} |
- sambamba | 0 | {bio} |
- sbmltoolbox | 0 | {bio-dev} |
- seqan | 0 | {bio-dev} |
- seq-gen | 0 | {bio} |
- simpleitk | 0 | {imaging-dev} |
- skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio} |
- solvate | 0 | {bio} |
- spaln | 0 | {bio} |
- trim-galore | 0 | {bio} |
- varna | 0 | {bio} |
-(339 rows)
+ Source | Vote | Tasks | Tags
+-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
+ dcmtk | 162 | {imaging,covid-19} |
+ orthanc | 99 | {imaging,practice,covid-19} |
+ gdcm | 49 | {imaging-dev} |
+ orthanc-wsi | 43 | {practice,imaging,covid-19,laboratory,oncology,his} |
+ amide | 35 | {imaging} |
+ htsjdk | 35 | {bio-dev} |
+ dcm2niix | 31 | {imaging} |
+ dicomscope | 28 | {imaging} |
+ dicom3tools | 25 | {imaging} |
+ gnumed-server | 18 | {covid-19,practice} |
+ pixelmed | 18 | {imaging} |
+ invesalius | 17 | {imaging} |
+ minc-tools | 17 | {imaging} |
+ ngs-sdk | 17 | {bio-dev} |
+ openslide | 16 | {imaging} |
+ gdcm | 15 | {covid-19,imaging} |
+ biojava-live | 14 | {bio-dev} |
+ king | 14 | {typesetting,imaging} |
+ vtk-dicom | 14 | {imaging} |
+ adun.app | 13 | {bio} |
+ insighttoolkit4 | 13 | {imaging-dev} |
+ ncbi-entrez-direct | 13 | {bio} |
+ cgview | 12 | {bio} |
+ psychopy | 12 | {psychology,covid-19} |
+ diamond-aligner | 11 | {covid-19,bio} |
+ ea-utils | 11 | {bio} |
+ mia | 11 | {imaging} |
+ staden | 11 | {bio} |
+ tree-puzzle | 11 | {cloud,bio-phylogeny,bio} |
+ biosig4c++ | 10 | {imaging,covid-19,physics} |
+ jebl2 | 10 | {bio-dev} |
+ king-probe | 10 | {bio} |
+ librg-utils-perl | 10 | {bio} |
+ norsp | 10 | {bio} |
+ plastimatch | 10 | {imaging} |
+ radiant | 10 | {bio} |
+ bppsuite | 9 | {bio} |
+ dazzdb | 9 | {bio} |
+ fastlink | 9 | {bio,cloud} |
+ gdcm | 9 | {imaging-dev} |
+ mipe | 9 | {cloud,bio} |
+ ncbi-seg | 9 | {bio} |
+ obitools | 9 | {bio} |
+ paml | 9 | {bio} |
+ ampliconnoise | 8 | {cloud,bio} |
+ arden | 8 | {bio,cloud} |
+ biomaj3-cli | 8 | {cloud} |
+ ecopcr | 8 | {bio} |
+ freebayes | 8 | {bio} |
+ freecontact | 8 | {cloud,bio} |
+ hunspell-en-med | 8 | {tools} |
+ maqview | 8 | {bio} |
+ mauve-aligner | 8 | {bio} |
+ melting | 8 | {cloud,bio} |
+ neobio | 8 | {cloud,bio} |
+ ngs-sdk | 8 | {bio-dev} |
+ phast | 8 | {bio} |
+ phyutility | 8 | {cloud,bio} |
+ piler | 8 | {bio} |
+ prime-phylo | 8 | {bio,cloud} |
+ pscan-tfbs | 8 | {bio} |
+ sigma-align | 8 | {bio,bio-phylogeny,cloud} |
+ abacas | 7 | {bio} |
+ alter-sequence-alignment | 7 | {bio} |
+ anfo | 7 | {bio,cloud} |
+ bio-tradis | 7 | {bio-dev,bio} |
+ bitseq | 7 | {bio} |
+ codonw | 7 | {bio} |
+ daligner | 7 | {bio,bio-ngs} |
+ edtsurf | 7 | {bio} |
+ embassy-domainatrix | 7 | {cloud,bio} |
+ estscan | 7 | {bio} |
+ fitgcp | 7 | {bio,cloud} |
+ jaligner | 7 | {bio} |
+ lagan | 7 | {bio} |
+ lamarc | 7 | {bio} |
+ lucy | 7 | {bio} |
+ microbegps | 7 | {bio} |
+ paraclu | 7 | {bio,cloud} |
+ perm | 7 | {cloud,bio} |
+ placnet | 7 | {bio} |
+ poretools | 7 | {bio} |
+ predictprotein | 7 | {bio} |
+ probabel | 7 | {cloud,bio} |
+ saint | 7 | {bio} |
+ seqsero | 7 | {bio} |
+ seqtools | 7 | {bio} |
+ sibsim4 | 7 | {cloud,bio} |
+ andi | 6 | {bio} |
+ baitfisher | 6 | {bio} |
+ beast2-mcmc | 6 | {bio} |
+ biomaj3-daemon | 6 | {bio} |
+ bio-rainbow | 6 | {bio} |
+ canu | 6 | {bio} |
+ centrifuge | 6 | {bio} |
+ clonalframeml | 6 | {covid-19,bio} |
+ dascrubber | 6 | {bio} |
+ elph | 6 | {bio} |
+ embassy-domalign | 6 | {cloud,bio} |
+ embassy-domsearch | 6 | {bio,cloud} |
+ gasic | 6 | {bio,cloud} |
+ gatb-core | 6 | {bio} |
+ harvest-tools | 6 | {bio} |
+ indelible | 6 | {bio} |
+ ipig | 6 | {bio} |
+ jellyfish1 | 6 | {bio} |
+ libminc | 6 | {imaging-dev} |
+ libpal-java | 6 | {bio-dev} |
+ mapsembler2 | 6 | {cloud,bio} |
+ mlv-smile | 6 | {cloud,bio} |
+ murasaki | 6 | {bio} |
+ orthanc-webviewer | 6 | {imaging} |
+ proalign | 6 | {bio-phylogeny,bio} |
+ pscan-chip | 6 | {bio} |
+ quorum | 6 | {bio} |
+ rdp-readseq | 6 | {bio} |
+ scythe | 6 | {bio} |
+ seqtools | 6 | {bio} |
+ sickle | 6 | {bio} |
+ spread-phy | 6 | {bio,bio-phylogeny} |
+ squizz | 6 | {cloud,bio} |
+ tracetuner | 6 | {bio} |
+ transtermhp | 6 | {bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ vsearch | 6 | {bio} |
+ zalign | 6 | {cloud,bio} |
+ assemblytics | 5 | {bio} |
+ bandage | 5 | {bio} |
+ beads | 5 | {bio} |
+ beast-mcmc | 5 | {bio-phylogeny,bio} |
+ brig | 5 | {bio} |
+ clonalorigin | 5 | {bio} |
+ cluster3 | 5 | {bio} |
+ dicompyler | 5 | {oncology} |
+ dwgsim | 5 | {bio} |
+ elastix | 5 | {imaging} |
+ ghmm | 5 | {bio} |
+ hinge | 5 | {bio} |
+ jmodeltest | 5 | {bio-phylogeny,bio} |
+ libdivsufsort | 5 | {bio-dev} |
+ libncl | 5 | {bio} |
+ librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ libsbml | 5 | {bio-dev} |
+ logol | 5 | {bio} |
+ maffilter | 5 | {bio} |
+ mhap | 5 | {bio,bio-ngs} |
+ mptp | 5 | {bio} |
+ openslide | 5 | {imaging-dev} |
+ patman | 5 | {bio} |
+ phipack | 5 | {bio} |
+ prottest | 5 | {bio,bio-phylogeny} |
+ pymia | 5 | {imaging-dev} |
+ rambo-k | 5 | {bio} |
+ rdp-classifier | 5 | {bio} |
+ repeatmasker-recon | 5 | {bio} |
+ seer | 5 | {bio} |
+ sprai | 5 | {bio} |
+ sumatra | 5 | {bio} |
+ tvc | 5 | {bio} |
+ blasr | 4 | {bio-ngs,bio} |
+ delly | 4 | {covid-19,bio} |
+ dindel | 4 | {bio} |
+ fastml | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
+ metaphlan2 | 4 | {bio} |
+ parsnp | 4 | {bio} |
+ pbdagcon | 4 | {bio} |
+ phybin | 4 | {bio} |
+ pilon | 4 | {bio} |
+ plasmidseeker | 4 | {bio} |
+ rampler | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ relion | 4 | {bio} |
+ roguenarok | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
+ salmon | 4 | {bio} |
+ samblaster | 4 | {covid-19,bio} |
+ sga | 4 | {bio} |
+ soapaligner | 4 | {bio} |
+ soapsnp | 4 | {bio} |
+ sweed | 4 | {bio} |
+ transrate-tools | 4 | {bio} |
+ velvetoptimiser | 4 | {bio} |
+ yaha | 4 | {bio} |
+ bart-view | 3 | {imaging} |
+ igor | 3 | {bio} |
+ libgff | 3 | {bio-dev} |
+ mrs | 3 | {bio} |
+ orthanc-dicomweb | 3 | {covid-19,imaging} |
+ orthanc-mysql | 3 | {imaging} |
+ relion | 3 | {bio} |
+ rtax | 3 | {bio,cloud} |
+ segemehl | 3 | {bio} |
+ seqmagick | 3 | {bio,covid-19} |
+ snap-aligner | 3 | {bio} |
+ stacks | 3 | {bio} |
+ suitename | 3 | {bio} |
+ sumaclust | 3 | {bio,covid-19} |
+ surankco | 3 | {bio} |
+ tnseq-transit | 3 | {bio,covid-19} |
+ varscan | 3 | {bio} |
+ ctn | 2 | {imaging-dev} |
+ cufflinks | 2 | {cloud,bio} |
+ getdata | 2 | {bio} |
+ kma | 2 | {bio,covid-19} |
+ kmerresistance | 2 | {bio} |
+ libsmithwaterman | 2 | {bio} |
+ nanook | 2 | {bio} |
+ opencfu | 2 | {laboratory} |
+ papyrus | 2 | {imaging-dev} |
+ qcumber | 2 | {bio} |
+ qrisk2 | 2 | {practice} |
+ samtools-legacy | 2 | {bio-dev} |
+ scrm | 2 | {bio} |
+ skesa | 2 | {bio} |
+ spaced | 2 | {bio} |
+ srf | 2 | {bio-dev} |
+ tree-puzzle | 2 | {bio-phylogeny,bio,cloud} |
+ volpack | 2 | {imaging-dev} |
+ acedb | 1 | {cloud,bio} |
+ atropos | 1 | {bio} |
+ biosig4c++ | 1 | {imaging-dev,physics} |
+ blimps | 1 | {bio} |
+ edflib | 1 | {imaging-dev} |
+ embassy-phylip | 1 | {cloud,bio} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
+ libchado-perl | 1 | {bio-dev} |
+ libctapimkt | 1 | {practice} |
+ libhmsbeagle | 1 | {bio-dev} |
+ libsmithwaterman | 1 | {bio-dev} |
+ libvistaio | 1 | {imaging-dev} |
+ maxflow | 1 | {imaging-dev} |
+ mencal | 1 | {tools} |
+ ngs-sdk | 1 | {bio-dev} |
+ nutsqlite | 1 | {tools} |
+ opensurgsim | 1 | {imaging-dev} |
+ orthanc-postgresql | 1 | {imaging} |
+ pal2nal | 1 | {bio} |
+ pilercr | 1 | {bio} |
+ ragout | 1 | {bio,covid-19} |
+ sift | 1 | {bio} |
+ stringtie | 1 | {covid-19,bio} |
+ thesias | 1 | {bio,covid-19} |
+ trace2dbest | 1 | {bio} |
+ vtk-dicom | 1 | {imaging-dev} |
+ augur | 0 | {bio,covid-19} |
+ bambamc | 0 | {bio-dev} |
+ bbmap | 0 | {covid-19} |
+ biobambam2 | 0 | {covid-19,bio-dev,bio} |
+ biojava4-live | 0 | {bio-dev} |
+ biosig4c++ | 0 | {physics} |
+ biosyntax | 0 | {bio} |
+ camp | 0 | {imaging-dev} |
+ emboss-explorer | 0 | {bio} |
+ emmax | 0 | {bio} |
+ fasta3 | 0 | {covid-19,bio} |
+ fis-gtm | 0 | {his} |
+ freecontact | 0 | {bio-dev} |
+ gatb-core | 0 | {bio-dev} |
+ htscodecs | 0 | {covid-19,bio-dev} |
+ libbiod | 0 | {bio-dev} |
+ libbioparser-dev | 0 | {bio-dev} |
+ libbpp-core | 0 | {bio-dev} |
+ libbpp-phyl | 0 | {bio-dev} |
+ libbpp-phyl-omics | 0 | {bio-dev} |
+ libbpp-popgen | 0 | {bio-dev} |
+ libbpp-raa | 0 | {bio-dev} |
+ libbpp-seq | 0 | {bio-dev} |
+ libbpp-seq-omics | 0 | {bio-dev} |
+ libdisorder | 0 | {bio-dev} |
+ libgenome | 0 | {bio-dev} |
+ libgkarrays | 0 | {bio-dev} |
+ libics | 0 | {covid-19,imaging-dev} |
+ libjloda-java | 0 | {bio-dev} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
+ libmems | 0 | {bio-dev} |
+ libmialm | 0 | {imaging-dev} |
+ libmuscle | 0 | {bio-dev} |
+ libncl | 0 | {bio-dev} |
+ libpll | 0 | {bio-dev} |
+ libpsortb | 0 | {bio-dev} |
+ libqes | 0 | {bio-dev} |
+ libseqlib | 0 | {bio-dev} |
+ libstatgen | 0 | {bio-dev} |
+ libxdf | 0 | {imaging-dev} |
+ metastudent-data | 0 | {bio} |
+ metastudent-data-2 | 0 | {bio} |
+ mia | 0 | {imaging-dev} |
+ miaviewit | 0 | {imaging-dev} |
+ milib | 0 | {bio-dev,covid-19} |
+ mssstest | 0 | {tools} |
+ murasaki | 0 | {bio} |
+ ncbi-vdb | 0 | {bio-dev} |
+ orthanc-imagej | 0 | {imaging} |
+ oscar | 0 | {practice,tools,data} |
+ pbcopper | 0 | {bio-dev} |
+ pbseqlib | 0 | {bio-dev} |
+ python-py2bit | 0 | {bio-dev,bio} |
+ python-questplus | 0 | {covid-19} |
+ python-scitrack | 0 | {covid-19} |
+ relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
+ sambamba | 0 | {bio} |
+ sbmltoolbox | 0 | {bio-dev} |
+ seqan | 0 | {bio-dev} |
+ seq-gen | 0 | {bio} |
+ simpleitk | 0 | {imaging-dev} |
+ skewer | 0 | {bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
+ solvate | 0 | {bio} |
+ spaln | 0 | {bio,covid-19} |
+ trim-galore | 0 | {bio} |
+ varna | 0 | {bio} |
+ python-etelemetry | -1 | {covid-19} |
+(344 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Thu, 26 Mar 2020 01:42:03 +0000
+Last-Update: Thu, 26 Mar 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -28,13 +28,14 @@ Last-Update: Thu, 26 Mar 2020 01:42:03 +0000
jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20190618.0ac41a0 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
+ kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
- libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200318.6fef1b7 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
+ ncbi-entrez-direct | 12.0.20190816 | 13.5.20200306 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00
picard-tools | 2.18.25 | 2.22.1 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
@@ -44,21 +45,22 @@ Last-Update: Thu, 26 Mar 2020 01:42:03 +0000
python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
python-cobra | 0.14.2 | 0.17.1 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
+ python-cutadapt | 2.8 | 2.9 | Andreas Tille,Kevin Murray,Olivier Sallou,Steffen Moeller | Steffen Moeller | 2020-02-03 10:50:38+00
python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
+ q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
- q2-metadata | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-02-03 08:42:28+00
racon | 1.4.10 | 1.4.12 | Andreas Tille,Cédric Lood | Michael R. Crusoe | 2019-11-12 17:22:24+00
relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
scrm | 1.7.3 | 1.7.4 | Kevin Murray | Andreas Tille | 2018-12-17 13:05:34+00
seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
- stacks | 2.41 | 2.52 | Andreas Tille,Tim Booth | Andreas Tille | 2019-07-12 19:11:30+00
+ spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00
sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(56 rows)
+(58 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0940b74bc4c5dc7abd29fbcef7218c1616890f64
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0940b74bc4c5dc7abd29fbcef7218c1616890f64
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