[med-svn] [Git][med-team/biobambam2][master] 7 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / biobambam2


Commits:
b8e1ad2e by Andreas Tille at 2020-03-27T08:29:20+01:00
routine-update: New upstream version

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7f020721 by Andreas Tille at 2020-03-27T08:29:21+01:00
New upstream version 2.0.160+ds
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a4ed7c90 by Andreas Tille at 2020-03-27T08:29:22+01:00
Update upstream source from tag 'upstream/2.0.160+ds'

Update to upstream version '2.0.160+ds'
with Debian dir ac89f15b9e7897b2a68d6d9cc0f9ef8d751eccc7
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6cd73fec by Andreas Tille at 2020-03-27T08:29:29+01:00
routine-update: Add salsa-ci file

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f5ac179f by Andreas Tille at 2020-03-27T08:29:29+01:00
routine-update: Rules-Requires-Root: no

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0b676e01 by Andreas Tille at 2020-03-27T10:16:59+01:00
Bumped versioned Build-Depends: libmaus2-dev (>= 2.0.713)

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565373b5 by Andreas Tille at 2020-03-27T10:49:15+01:00
Upload to unstable

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27 changed files:

- .gitignore
- ChangeLog
- configure.ac
- debian/changelog
- debian/control
- + debian/salsa-ci.yml
- src/Makefile.am
- src/biobambam2/DepthInterval.cpp
- src/biobambam2/DepthInterval.hpp
- + src/biobambam2/DepthIntervalGetter.hpp
- src/programs/bamadapterfind.cpp
- src/programs/bamauxmerge2.cpp
- src/programs/bamcat.cpp
- src/programs/bamcollate2.cpp
- src/programs/bamconsensus.cpp
- src/programs/bamdepth.cpp
- + src/programs/bamdepthmerge.cpp
- + src/programs/bamexondepth.cpp
- + src/programs/bamexploderg.cpp
- src/programs/bamfeaturecount.cpp
- + src/programs/bamfilterbyname.cpp
- src/programs/bamfilterheader2.cpp
- src/programs/bamfixpairinfo.cpp
- + src/programs/bamheadercat.cpp
- src/programs/bamheap2.cpp
- src/programs/bamheap3.cpp
- src/programs/bammarkduplicatesopt.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/biobambam2/-/compare/22a85a2ab4f2e4f08936a95d8c591e0fe02daae0...565373b5d1ead2f045943e270d479ad8366dd310

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View it on GitLab: https://salsa.debian.org/med-team/biobambam2/-/compare/22a85a2ab4f2e4f08936a95d8c591e0fe02daae0...565373b5d1ead2f045943e270d479ad8366dd310
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