Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d0ad53cd by Andreas Tille at 2020-03-31T13:44:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,224 +1,223 @@
-Last-Update: Tue, 31 Mar 2020 01:42:03 +0000
+Last-Update: Tue, 31 Mar 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 166 | {covid-19,imaging} |
+ dcmtk | 165 | {covid-19,imaging} |
orthanc | 94 | {imaging,practice,covid-19} |
- gdcm | 47 | {imaging-dev} |
- orthanc-wsi | 41 | {oncology,his,imaging,practice,covid-19,laboratory} |
- htsjdk | 34 | {bio-dev} |
- amide | 33 | {imaging} |
- dcm2niix | 29 | {imaging} |
- dicomscope | 27 | {imaging} |
- dicom3tools | 24 | {imaging} |
- gdcm | 20 | {imaging,covid-19} |
+ gdcm | 46 | {imaging-dev} |
+ orthanc-wsi | 40 | {oncology,his,imaging,practice,covid-19,laboratory} |
+ htsjdk | 33 | {bio-dev} |
+ amide | 32 | {imaging} |
+ dcm2niix | 27 | {imaging} |
+ dicomscope | 26 | {imaging} |
+ dicom3tools | 23 | {imaging} |
+ gdcm | 19 | {imaging,covid-19} |
gnumed-server | 19 | {covid-19,practice} |
- minc-tools | 18 | {imaging} |
- pixelmed | 18 | {imaging} |
+ minc-tools | 17 | {imaging} |
ngs-sdk | 17 | {bio-dev} |
- invesalius | 15 | {imaging} |
- ncbi-entrez-direct | 15 | {bio} |
- openslide | 15 | {imaging} |
- vtk-dicom | 15 | {imaging} |
- biojava-live | 14 | {bio-dev} |
- king | 14 | {typesetting,imaging} |
+ pixelmed | 17 | {imaging} |
+ ncbi-entrez-direct | 14 | {bio} |
+ openslide | 14 | {imaging} |
+ vtk-dicom | 14 | {imaging} |
+ biojava-live | 13 | {bio-dev} |
insighttoolkit4 | 13 | {imaging-dev} |
- cgview | 12 | {bio} |
- ea-utils | 12 | {bio} |
- mia | 12 | {imaging} |
- adun.app | 11 | {bio} |
- diamond-aligner | 11 | {covid-19,bio} |
- jebl2 | 11 | {bio-dev} |
- king-probe | 11 | {bio} |
+ invesalius | 13 | {imaging} |
+ king | 13 | {typesetting,imaging} |
+ cgview | 11 | {bio} |
+ ea-utils | 11 | {bio} |
+ mia | 11 | {imaging} |
psychopy | 11 | {psychology} |
- radiant | 11 | {bio} |
- staden | 11 | {bio} |
- dazzdb | 10 | {bio} |
- librg-utils-perl | 10 | {bio} |
- norsp | 10 | {bio} |
- obitools | 10 | {bio} |
- plastimatch | 10 | {imaging} |
- tree-puzzle | 10 | {bio,bio-phylogeny,cloud} |
- biosig4c++ | 9 | {physics,imaging} |
- bppsuite | 9 | {bio} |
- fastlink | 9 | {bio,cloud} |
- gdcm | 9 | {imaging-dev} |
- mipe | 9 | {cloud,bio} |
- ncbi-seg | 9 | {bio} |
+ adun.app | 10 | {bio} |
+ diamond-aligner | 10 | {covid-19,bio} |
+ jebl2 | 10 | {bio-dev} |
+ king-probe | 10 | {bio} |
+ radiant | 10 | {bio} |
+ staden | 10 | {bio} |
+ dazzdb | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
- phast | 9 | {bio} |
- prime-phylo | 9 | {cloud,bio} |
+ obitools | 9 | {bio} |
+ plastimatch | 9 | {imaging} |
pscan-tfbs | 9 | {bio} |
- abacas | 8 | {bio} |
- ampliconnoise | 8 | {bio,cloud} |
- anfo | 8 | {cloud,bio} |
- arden | 8 | {bio,cloud} |
- biomaj3-cli | 8 | {cloud} |
- daligner | 8 | {bio-ngs,bio} |
- ecopcr | 8 | {bio} |
- embassy-domainatrix | 8 | {bio,cloud} |
- freecontact | 8 | {bio,cloud} |
+ tree-puzzle | 9 | {bio,bio-phylogeny,cloud} |
+ biosig4c++ | 8 | {physics,imaging} |
+ bppsuite | 8 | {bio} |
+ fastlink | 8 | {bio,cloud} |
+ gdcm | 8 | {imaging-dev} |
hunspell-en-med | 8 | {tools} |
- jaligner | 8 | {bio} |
- maqview | 8 | {bio} |
- melting | 8 | {bio,cloud} |
- neobio | 8 | {bio,cloud} |
- paml | 8 | {bio} |
- phyutility | 8 | {cloud,bio} |
- piler | 8 | {bio} |
+ librg-utils-perl | 8 | {bio} |
+ mipe | 8 | {cloud,bio} |
+ norsp | 8 | {bio} |
+ phast | 8 | {bio} |
+ prime-phylo | 8 | {cloud,bio} |
seqsero | 8 | {bio} |
sigma-align | 8 | {cloud,bio-phylogeny,bio} |
- bio-tradis | 7 | {bio,bio-dev} |
- bitseq | 7 | {bio} |
- codonw | 7 | {bio} |
- edtsurf | 7 | {bio} |
- embassy-domalign | 7 | {cloud,bio} |
+ abacas | 7 | {bio} |
+ ampliconnoise | 7 | {bio,cloud} |
+ anfo | 7 | {cloud,bio} |
+ arden | 7 | {bio,cloud} |
+ biomaj3-cli | 7 | {cloud} |
+ daligner | 7 | {bio-ngs,bio} |
+ ecopcr | 7 | {bio} |
+ embassy-domainatrix | 7 | {bio,cloud} |
embassy-domsearch | 7 | {bio,cloud} |
- estscan | 7 | {bio} |
- fitgcp | 7 | {cloud,bio} |
- freebayes | 7 | {bio} |
- gasic | 7 | {bio,cloud} |
- lagan | 7 | {bio} |
- lamarc | 7 | {bio} |
- lucy | 7 | {bio} |
- mauve-aligner | 7 | {bio} |
- microbegps | 7 | {bio} |
- mlv-smile | 7 | {bio,cloud} |
- paraclu | 7 | {bio,cloud} |
- perm | 7 | {bio,cloud} |
- placnet | 7 | {bio} |
- poretools | 7 | {bio} |
- predictprotein | 7 | {bio} |
- probabel | 7 | {bio,cloud} |
+ freecontact | 7 | {bio,cloud} |
+ jaligner | 7 | {bio} |
+ maqview | 7 | {bio} |
+ melting | 7 | {bio,cloud} |
+ ncbi-seg | 7 | {bio} |
+ neobio | 7 | {bio,cloud} |
+ paml | 7 | {bio} |
+ phyutility | 7 | {cloud,bio} |
+ piler | 7 | {bio} |
saint | 7 | {bio} |
- seqtools | 7 | {bio} |
sibsim4 | 7 | {bio,cloud} |
- tracetuner | 7 | {bio} |
- alter-sequence-alignment | 6 | {bio} |
- andi | 6 | {bio} |
- baitfisher | 6 | {bio} |
- bandage | 6 | {bio} |
- beads | 6 | {bio} |
- beast2-mcmc | 6 | {bio} |
- biomaj3-daemon | 6 | {bio} |
- bio-rainbow | 6 | {bio} |
- brig | 6 | {bio} |
- canu | 6 | {bio} |
- centrifuge | 6 | {bio} |
- clonalframeml | 6 | {covid-19,bio} |
- clonalorigin | 6 | {bio} |
- dascrubber | 6 | {bio} |
- elph | 6 | {bio} |
- gatb-core | 6 | {bio} |
- ghmm | 6 | {bio} |
- harvest-tools | 6 | {bio} |
- indelible | 6 | {bio} |
- ipig | 6 | {bio} |
- jellyfish1 | 6 | {bio} |
- logol | 6 | {bio} |
- mapsembler2 | 6 | {cloud,bio} |
- murasaki | 6 | {bio} |
+ bio-tradis | 6 | {bio,bio-dev} |
+ bitseq | 6 | {bio} |
+ codonw | 6 | {bio} |
+ edtsurf | 6 | {bio} |
+ embassy-domalign | 6 | {cloud,bio} |
+ estscan | 6 | {bio} |
+ fitgcp | 6 | {cloud,bio} |
+ freebayes | 6 | {bio} |
+ gasic | 6 | {bio,cloud} |
+ lagan | 6 | {bio} |
+ lamarc | 6 | {bio} |
+ lucy | 6 | {bio} |
+ mauve-aligner | 6 | {bio} |
+ microbegps | 6 | {bio} |
+ mlv-smile | 6 | {bio,cloud} |
orthanc-webviewer | 6 | {imaging} |
- parsnp | 6 | {bio} |
- proalign | 6 | {bio,bio-phylogeny} |
- pscan-chip | 6 | {bio} |
+ paraclu | 6 | {bio,cloud} |
+ perm | 6 | {bio,cloud} |
+ placnet | 6 | {bio} |
+ poretools | 6 | {bio} |
+ probabel | 6 | {bio,cloud} |
pymia | 6 | {imaging-dev} |
- quorum | 6 | {bio} |
rambo-k | 6 | {bio} |
rdp-readseq | 6 | {bio} |
- repeatmasker-recon | 6 | {bio} |
+ salmon | 6 | {bio} |
scythe | 6 | {bio} |
- seer | 6 | {bio} |
seqtools | 6 | {bio} |
sickle | 6 | {bio} |
- sprai | 6 | {bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
squizz | 6 | {cloud,bio} |
- transtermhp | 6 | {bio} |
+ tracetuner | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
- vsearch | 6 | {bio} |
- zalign | 6 | {cloud,bio} |
- assemblytics | 5 | {bio} |
- beast-mcmc | 5 | {bio,bio-phylogeny} |
+ alter-sequence-alignment | 5 | {bio} |
+ andi | 5 | {bio} |
+ baitfisher | 5 | {bio} |
+ bandage | 5 | {bio} |
+ beads | 5 | {bio} |
+ beast2-mcmc | 5 | {bio} |
+ biomaj3-daemon | 5 | {bio} |
+ bio-rainbow | 5 | {bio} |
+ brig | 5 | {bio} |
+ canu | 5 | {bio} |
+ centrifuge | 5 | {bio} |
+ clonalframeml | 5 | {covid-19,bio} |
+ clonalorigin | 5 | {bio} |
cluster3 | 5 | {bio} |
- dwgsim | 5 | {bio} |
- fastml | 5 | {bio} |
- hinge | 5 | {bio} |
- jmodeltest | 5 | {bio-phylogeny,bio} |
+ dascrubber | 5 | {bio} |
+ elph | 5 | {bio} |
+ gatb-core | 5 | {bio} |
+ ghmm | 5 | {bio} |
+ harvest-tools | 5 | {bio} |
+ indelible | 5 | {bio} |
+ ipig | 5 | {bio} |
+ jellyfish1 | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
libminc | 5 | {imaging-dev} |
- libncl | 5 | {bio} |
- libpal-java | 5 | {bio-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
- maffilter | 5 | {bio} |
- mhap | 5 | {bio,bio-ngs} |
- mptp | 5 | {bio} |
+ logol | 5 | {bio} |
+ mapsembler2 | 5 | {cloud,bio} |
+ murasaki | 5 | {bio} |
openslide | 5 | {imaging-dev} |
- patman | 5 | {bio} |
- phipack | 5 | {bio} |
+ parsnp | 5 | {bio} |
+ predictprotein | 5 | {bio} |
+ proalign | 5 | {bio,bio-phylogeny} |
+ pscan-chip | 5 | {bio} |
+ quorum | 5 | {bio} |
rdp-classifier | 5 | {bio} |
- salmon | 5 | {bio} |
+ repeatmasker-recon | 5 | {bio} |
+ seer | 5 | {bio} |
+ seqtools | 5 | {bio} |
+ sprai | 5 | {bio} |
sumatra | 5 | {bio} |
- tvc | 5 | {bio} |
- blasr | 4 | {bio-ngs,bio} |
- delly | 4 | {covid-19,bio} |
- dicompyler | 4 | {oncology} |
- dindel | 4 | {bio} |
+ transtermhp | 5 | {bio} |
+ vsearch | 5 | {bio} |
+ zalign | 5 | {cloud,bio} |
+ assemblytics | 4 | {bio} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
+ dwgsim | 4 | {bio} |
elastix | 4 | {imaging} |
- fsm-lite | 4 | {bio} |
+ fastml | 4 | {bio} |
+ hinge | 4 | {bio} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
+ libncl | 4 | {bio} |
+ libpal-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
- metaphlan2 | 4 | {bio} |
- pbdagcon | 4 | {bio} |
- phybin | 4 | {bio} |
- pilon | 4 | {bio} |
- plasmidseeker | 4 | {bio} |
+ maffilter | 4 | {bio} |
+ mhap | 4 | {bio,bio-ngs} |
+ mptp | 4 | {bio} |
+ mrs | 4 | {bio} |
+ patman | 4 | {bio} |
+ phipack | 4 | {bio} |
prottest | 4 | {bio-phylogeny,bio} |
rampler | 4 | {bio} |
rdp-alignment | 4 | {bio} |
relion | 4 | {bio} |
roguenarok | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
samblaster | 4 | {bio,covid-19} |
sga | 4 | {bio} |
soapsnp | 4 | {bio} |
sweed | 4 | {bio} |
- transrate-tools | 4 | {bio} |
- velvetoptimiser | 4 | {bio} |
- yaha | 4 | {bio} |
+ tvc | 4 | {bio} |
bart-view | 3 | {imaging} |
- igor | 3 | {bio} |
- mrs | 3 | {bio} |
+ blasr | 3 | {bio-ngs,bio} |
+ delly | 3 | {covid-19,bio} |
+ dicompyler | 3 | {oncology} |
+ dindel | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
+ metaphlan2 | 3 | {bio} |
orthanc-dicomweb | 3 | {imaging,covid-19} |
orthanc-mysql | 3 | {imaging} |
+ pbdagcon | 3 | {bio} |
+ phybin | 3 | {bio} |
+ pilon | 3 | {bio} |
+ plasmidseeker | 3 | {bio} |
relion | 3 | {bio} |
rtax | 3 | {cloud,bio} |
- segemehl | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
seqmagick | 3 | {bio,covid-19} |
snap-aligner | 3 | {bio} |
soapaligner | 3 | {bio} |
- stacks | 3 | {bio} |
suitename | 3 | {bio} |
sumaclust | 3 | {covid-19,bio} |
surankco | 3 | {bio} |
tnseq-transit | 3 | {bio,covid-19} |
+ transrate-tools | 3 | {bio} |
varscan | 3 | {bio} |
+ velvetoptimiser | 3 | {bio} |
+ yaha | 3 | {bio} |
biosig4c++ | 2 | {imaging-dev,physics} |
cufflinks | 2 | {bio,cloud} |
getdata | 2 | {bio} |
+ igor | 2 | {bio} |
kma | 2 | {bio} |
kmerresistance | 2 | {bio} |
libgff | 2 | {bio-dev} |
libsmithwaterman | 2 | {bio} |
mencal | 2 | {tools} |
- nanook | 2 | {bio} |
ngs-sdk | 2 | {bio-dev} |
nutsqlite | 2 | {tools} |
qcumber | 2 | {bio} |
samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
+ segemehl | 2 | {bio} |
skesa | 2 | {bio} |
spaced | 2 | {bio} |
srf | 2 | {bio-dev} |
+ stacks | 2 | {bio} |
thesias | 2 | {covid-19,bio} |
tree-puzzle | 2 | {bio,bio-phylogeny,cloud} |
volpack | 2 | {imaging-dev} |
@@ -232,6 +231,7 @@ Last-Update: Tue, 31 Mar 2020 01:42:03 +0000
libsmithwaterman | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
maxflow | 1 | {imaging-dev} |
+ nanook | 1 | {bio} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,70 +1,70 @@
-Last-Update: Tue, 31 Mar 2020 01:42:03 +0000
+Last-Update: Tue, 31 Mar 2020 13:42:04 +0000
- source | version | upstream_version | uploaders | Last uploader | Last uploaded
--------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
- augur | 6.4.2 | 6.4.3 | Andreas Tille | Andreas Tille | 2020-03-25 07:34:13+00
- baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
- beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
- biobambam2 | 2.0.160 | 2.0.160+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00
- biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
- biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
- biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
- charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00
- ctdopts | 1.2 | 1.3 | Michael R. Crusoe | Michael R. Crusoe | 2018-02-28 12:34:26+00
- cwltool | 2.0.20200224214940 | 3.0.20200324120055 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
- cyvcf2 | 0.11.6 | 0.11.7 | Liubov Chuprikova,Steffen Moeller | Andreas Tille | 2020-03-30 09:03:56+00
- daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
- dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
- dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00
- fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
- gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
- gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
- hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
- htsjdk | 2.18.2 | 2.21.3 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00
- igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
- imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
- jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
- kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
- king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
- kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
- libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200318.6fef1b7 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libmaus2 | 2.0.713 | 2.0.714 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00
- libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
- libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
- libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
- metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
- ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
- ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
- pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
- plink2 | 2.00~a3-200217 | 200328 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
- pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
- pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-20 11:00:12+00
- python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
- python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
- python-cobra | 0.14.2 | 0.18.0 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
- python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
- python-cutadapt | 2.8 | 2.9 | Andreas Tille,Kevin Murray,Olivier Sallou,Steffen Moeller | Steffen Moeller | 2020-02-03 10:50:38+00
- python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200326.ea0808a | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
- python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
- python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
- python-skbio | 0.5.5 | 0.5.6 | Andreas Tille,Kevin Murray,Tim Booth | Michael R. Crusoe | 2020-02-28 14:48:20+00
- python-treetime | 0.7.1 | 0.7.4 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00
- q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
- q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
- relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
- resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
- salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
- scrm | 1.7.3 | 1.7.4 | Kevin Murray | Andreas Tille | 2018-12-17 13:05:34+00
- seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
- simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00
- spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
- stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00
- sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
- t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
- ugene | 33.0 | 34.0 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2020-01-12 16:25:44+00
- vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
- xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
+ source | version | upstream_version | uploaders | Last uploader | Last uploaded
+-------------------------------+---------------------------------+---------------------------------+-------------------------------------------------------------------------+----------------------+------------------------
+ augur | 6.4.2 | 6.4.3 | Andreas Tille | Andreas Tille | 2020-03-25 07:34:13+00
+ baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
+ beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
+ biobambam2 | 2.0.160 | 2.0.162+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00
+ biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
+ biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
+ charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00
+ cwltool | 2.0.20200224214940 | 3.0.20200324120055 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
+ cyvcf2 | 0.11.6 | 0.11.7 | Liubov Chuprikova,Steffen Moeller | Andreas Tille | 2020-03-30 09:03:56+00
+ daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
+ dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
+ discosnp | 2.4.3 | 4.4.4 | Andreas Tille,Olivier Sallou | Andreas Tille | 2020-01-27 15:19:13+00
+ ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
+ falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00
+ fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
+ gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
+ gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
+ hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
+ igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
+ igv | 2.4.17 | 2.8.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
+ imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
+ ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
+ jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
+ kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
+ king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
+ kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200330.cb91494 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libmaus2 | 2.0.713 | 2.0.714 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00
+ libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
+ libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
+ libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
+ metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
+ mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
+ ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
+ ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
+ nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
+ pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
+ plink2 | 2.00~a3-200217 | 200328 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
+ pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-20 11:00:12+00
+ python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
+ python-cobra | 0.14.2 | 0.18.0 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
+ python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
+ python-cutadapt | 2.8 | 2.9 | Andreas Tille,Kevin Murray,Olivier Sallou,Steffen Moeller | Steffen Moeller | 2020-02-03 10:50:38+00
+ python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200326.ea0808a | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
+ python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
+ python-skbio | 0.5.5 | 0.5.6 | Andreas Tille,Kevin Murray,Tim Booth | Michael R. Crusoe | 2020-02-28 14:48:20+00
+ q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
+ q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
+ resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
+ scrm | 1.7.3 | 1.7.4 | Kevin Murray | Andreas Tille | 2018-12-17 13:05:34+00
+ seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
+ simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00
+ skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00
+ spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
+ sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
+ stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00
+ sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
+ t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
+ umis | 1.0.6 | 1.0.7 | Andreas Tille | Andreas Tille | 2020-01-27 07:34:12+00
+ unanimity | 3.3.0 | 4.2.0-1 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
+ vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
+ xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
(63 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d0ad53cd1b5e1081afe7437a3769192e8c561a08
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