[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Tue Mar 31 02:44:25 BST 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
30be041b by Andreas Tille at 2020-03-31T01:44:21+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Mon, 30 Mar 2020 13:42:04 +0000
+Last-Update: Tue, 31 Mar 2020 01:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------


=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Mon, 30 Mar 2020 13:42:04 +0000
+Last-Update: Tue, 31 Mar 2020 01:42:03 +0000
 
  source                        |             version             |        upstream_version         |                      uploaders                                            | Last uploader        |     Last uploaded      
 -------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
@@ -12,6 +12,7 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000
  charls                        | 2.0.0                           | 2.1.0                           | Andreas Tille                                                             | Andreas Tille        | 2019-01-10 20:10:56+00
  ctdopts                       | 1.2                             | 1.3                             | Michael R. Crusoe                                                         | Michael R. Crusoe    | 2018-02-28 12:34:26+00
  cwltool                       | 2.0.20200224214940              | 3.0.20200324120055              | Michael R. Crusoe                                                         | Michael R. Crusoe    | 2020-02-26 12:07:54+00
+ cyvcf2                        | 0.11.6                          | 0.11.7                          | Liubov Chuprikova,Steffen Moeller                                         | Andreas Tille        | 2020-03-30 09:03:56+00
  daligner                      | 1.0+git20200115.c2b47da         | 1.0+git20200322.477d5b9         | Andreas Tille                                                             | Andreas Tille        | 2020-01-28 10:34:12+00
  dazzdb                        | 1.0+git20200115.d8adde7         | 1.0+git20200322.ba88d76         | Andreas Tille                                                             | Andreas Tille        | 2020-01-23 16:34:35+00
  dcm2niix                      | 1.0.20181125                    | 1.0.20190902                    | Ghislain Antony Vaillant                                                  | Andreas Tille        | 2019-01-30 10:04:52+00
@@ -21,7 +22,6 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000
  hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                        | Yaroslav Halchenko   | 2020-02-03 03:01:25+00
  htsjdk                        | 2.18.2                          | 2.21.3                          | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean               | Andreas Tille        | 2019-03-01 22:19:40+00
  igdiscover                    | 0.11                            | 0.12.3                          | Steffen Moeller                                                           | Andreas Tille        | 2019-09-06 07:04:02+00
- igraph                        | 0.8.0                           | 0.8.1                           | Andreas Tille                                                             | Andreas Tille        | 2020-03-14 20:10:56+00
  imagej                        | 1.52r                           | 1.52u                           | David Miguel Susano Pinto                                                 | Andreas Tille        | 2019-12-04 14:55:11+00
  jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                             | Andreas Tille        | 2018-07-05 12:05:57+00
  kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20200325.3558942       | Andreas Tille                                                             | Andreas Tille        | 2019-02-14 13:26:09+00
@@ -91,7 +91,6 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000
  camp                          | 900181 | normal    | camp: FTBFS on 32bit big endian: check metaclass->function("f4").call(object, camp::Args(1, 4, 15)).to<unsigned long>() == 20 has failed
  clonalorigin                  | 884475 | wishlist  | clonalorigin: FTBFS on alpha: tests time out
  cwltool                       | 954496 | serious   | cwltool: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.7 3.8" returned exit code 13
- cyvcf2                        | 954603 | serious   | cyvcf2: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.7 3.8" returned exit code 13
  dawg                          | 903886 | important | dawg: Test suite fails
  dcmtk                         | 637687 | wishlist  | libdcmtk2-dev: Dcmtk headers cause compile failure
  dcmtk                         | 675448 | important | dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file
@@ -140,7 +139,6 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000
  htsjdk                        | 877590 | normal    | FTBFS: error: package org.testng does not exist
  htsjdk                        | 920588 | normal    | htsjdk: Autopkgtest for htsjdk
  htslib                        | 922860 | normal    | Packages do not contain the upstream README file
- igraph                        | 953941 | serious   | igraph - Incomplete debian/copyright
  igv                           | 940606 | normal    | new upstream (2.6.3)
  insighttoolkit4               | 724711 | wishlist  | insighttoolkit4: Drops architecture support
  insighttoolkit4               | 759794 | wishlist  | insighttoolkit4: FTBFS on amd64 with ENOSPC
@@ -216,7 +214,6 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000
  pynast                        | 937488 | normal    | pynast: Python2 removal in sid/bullseye
  pynast                        | 948081 | serious   | pynast build depends on and recommends the removed blast2 transitional package
  pynn                          | 813821 | serious   | pynn: FTBFS: TypeError: 'float' object cannot be interpreted as an index
- pyqi                          | 954500 | serious   | pyqi: FTBFS: dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
  python-biom-format            | 820060 | normal    | python-biom-format: broken on big-endian architectures
  python-biom-format            | 950929 | normal    | python-biom-format: FTBFS with pandas 1.0: test failures
  python-cogent                 | 950474 | important | python-cogent FTBFS on armel and i386: test failures
@@ -228,7 +225,6 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000
  python-pysam                  | 938092 | normal    | python-pysam: Python2 removal in sid/bullseye
  python-ruffus                 | 841073 | wishlist  | python-ruffus: Needs 18 GB of RAM to build
  python-tinyalign              | 952603 | normal    | python-tinyalign: license of buildwheels.sh is CC0
- python-wordcloud              | 955336 | normal    | python-wordcloud: d/copyright: wordcloud/_version.py has a different license
  q2cli                         | 954601 | serious   | q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 -s custom "--test-args=cd {build_dir}; HOME=/<<PKGBUILDDIR>> QIIMETEST= nosetests3" returned exit code 13
  q2-demux                      | 950933 | normal    | q2-demux: FTBFS with pandas 1.0: test failures
  q2templates                   | 950931 | normal    | q2templates: FTBFS with pandas 1.0: test failures
@@ -273,5 +269,5 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000
  xmedcon                       | 671828 | normal    | xmedcon: Cannot open file with YBR photometric interpretation
  xmedcon                       | 779707 | normal    | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
  xmedcon                       | 924017 | normal    | desktop entry
-(203 rows)
+(199 rows)
 



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/30be041be0774deb0dbfa5232b963e497071a6d5

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/30be041be0774deb0dbfa5232b963e497071a6d5
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