[med-svn] [Git][med-team/toil][upstream] New upstream version 4.1.0

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / toil


Commits:
cb23bada by Michael R. Crusoe at 2020-05-07T15:00:23+02:00
New upstream version 4.1.0
- - - - -


30 changed files:

- .gitlab-ci.yml
- Makefile
- README.rst
- docker/Dockerfile.py
- docs/appendices/environment_vars.rst
- docs/running/cliOptions.rst
- setup.py
- src/toil/__init__.py
- src/toil/batchSystems/__init__.py
- src/toil/batchSystems/abstractBatchSystem.py
- src/toil/batchSystems/abstractGridEngineBatchSystem.py
- src/toil/batchSystems/gridengine.py
- src/toil/batchSystems/kubernetes.py
- src/toil/batchSystems/lsf.py
- src/toil/batchSystems/mesos/batchSystem.py
- src/toil/batchSystems/options.py
- src/toil/batchSystems/singleMachine.py
- src/toil/batchSystems/slurm.py
- src/toil/batchSystems/torque.py
- src/toil/common.py
- src/toil/cwl/cwltoil.py
- src/toil/jobStores/aws/jobStore.py
- src/toil/jobStores/fileJobStore.py
- src/toil/jobStores/utils.py
- src/toil/leader.py
- src/toil/lib/misc.py
- src/toil/lib/threading.py
- src/toil/resource.py
- src/toil/test/cwl/cwlTest.py
- + src/toil/test/docs/scripts/example_cachingbenchmark.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/cb23badacb308e05ce30cd483c99a9835b75a4e5

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