[med-svn] [Git][med-team/manta][master] 7 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / manta


Commits:
431f8cfb by Andreas Tille at 2020-05-11T14:47:25+02:00
routine-update: New upstream version

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1cd85e93 by Andreas Tille at 2020-05-11T14:47:26+02:00
New upstream version 1.6.0+dfsg
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74e426f6 by Andreas Tille at 2020-05-11T14:47:28+02:00
Update upstream source from tag 'upstream/1.6.0+dfsg'

Update to upstream version '1.6.0+dfsg'
with Debian dir 5650b4a1a5dbb8521ff9c2935e52ef435e6d6434
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aa8b2d1a by Andreas Tille at 2020-05-11T14:47:28+02:00
routine-update: Standards-Version: 4.5.0

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1093448f by Andreas Tille at 2020-05-11T14:47:28+02:00
routine-update: debhelper-compat 12

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5a4d9f35 by Andreas Tille at 2020-05-11T14:58:06+02:00
Adapt patches to new upstream version

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0298ee72 by Andreas Tille at 2020-05-11T14:59:47+02:00
Just set python3 depends and hope for upstream working on a fix.  Before we can not get it into Debian anyway.

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30 changed files:

- CHANGELOG.md
- COPYRIGHT.txt
- debian/changelog
- − debian/compat
- debian/control
- debian/patches/use_debian_packaged_htslib.patch
- debian/patches/use_debian_packaged_samtools.patch
- debian/rules
- docs/developerGuide/README.md
- docs/developerGuide/debugFullRun.md
- docs/developerGuide/debugSingleSV.md
- docs/methods/primary/methods.tex
- docs/userGuide/README.md
- redist/CMakeLists.txt
- redist/README.md
- + redist/ctpl-0.0.2/LICENSE
- + redist/ctpl-0.0.2/README.md
- + redist/ctpl-0.0.2/ctpl.h
- + redist/ctpl-0.0.2/ctpl_stl.h
- src/CMakeLists.txt
- + src/c++/.clang-format
- src/c++/CMakeLists.txt
- src/c++/bin/CMakeLists.txt
- src/c++/bin/CheckSVLoci.cpp
- src/c++/bin/DumpSVLoci.cpp
- src/c++/bin/EstimateSVLoci.cpp
- src/c++/bin/GenerateSVCandidates.cpp
- src/c++/bin/GetAlignmentStats.cpp
- src/c++/bin/GetChromDepth.cpp
- src/c++/bin/MergeAlignmentStats.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/manta/-/compare/c6e31c23852154b3b96e374c57fe4871558f152c...0298ee72262f0fbc1431f6a912888c9a27f21f52

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View it on GitLab: https://salsa.debian.org/med-team/manta/-/compare/c6e31c23852154b3b96e374c57fe4871558f152c...0298ee72262f0fbc1431f6a912888c9a27f21f52
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