[med-svn] [Git][med-team/manta][upstream] New upstream version 1.6.0+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / manta


Commits:
1cd85e93 by Andreas Tille at 2020-05-11T14:47:26+02:00
New upstream version 1.6.0+dfsg
- - - - -


30 changed files:

- CHANGELOG.md
- COPYRIGHT.txt
- docs/developerGuide/README.md
- docs/developerGuide/debugFullRun.md
- docs/developerGuide/debugSingleSV.md
- docs/methods/primary/methods.tex
- docs/userGuide/README.md
- redist/CMakeLists.txt
- redist/README.md
- + redist/ctpl-0.0.2/LICENSE
- + redist/ctpl-0.0.2/README.md
- + redist/ctpl-0.0.2/ctpl.h
- + redist/ctpl-0.0.2/ctpl_stl.h
- src/CMakeLists.txt
- + src/c++/.clang-format
- src/c++/CMakeLists.txt
- src/c++/bin/CMakeLists.txt
- src/c++/bin/CheckSVLoci.cpp
- src/c++/bin/DumpSVLoci.cpp
- src/c++/bin/EstimateSVLoci.cpp
- src/c++/bin/GenerateSVCandidates.cpp
- src/c++/bin/GetAlignmentStats.cpp
- src/c++/bin/GetChromDepth.cpp
- src/c++/bin/MergeAlignmentStats.cpp
- − src/c++/bin/MergeEdgeStats.cpp
- src/c++/bin/MergeSVLoci.cpp
- src/c++/bin/SummarizeAlignmentStats.cpp
- src/c++/bin/SummarizeSVLoci.cpp
- src/c++/bin/TestAssembler.cpp
- src/c++/lib/CMakeLists.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/manta/-/commit/1cd85e93fa9915e47e765540c51ccc0a7cef5bfb

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