Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
51eba0ce by Andreas Tille at 2020-05-13T13:45:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,84 +1,83 @@
-Last-Update: Wed, 13 May 2020 01:42:03 +0000
+Last-Update: Wed, 13 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 185 | {imaging,covid-19} |
- orthanc | 94 | {practice,imaging,covid-19} |
- gdcm | 53 | {imaging-dev} |
- orthanc-wsi | 48 | {practice,covid-19,imaging,his,oncology,laboratory} |
- dicom3tools | 34 | {imaging} |
+ dcmtk | 183 | {imaging,covid-19} |
+ orthanc | 94 | {covid-19,practice,imaging} |
+ gdcm | 54 | {imaging-dev} |
+ orthanc-wsi | 48 | {imaging,covid-19,practice,laboratory,oncology,his} |
dicomscope | 33 | {imaging} |
- htsjdk | 32 | {bio-dev} |
- dcm2niix | 25 | {imaging} |
- gdcm | 25 | {covid-19,imaging} |
- pixelmed | 20 | {imaging} |
- invesalius | 17 | {imaging} |
+ dicom3tools | 32 | {imaging} |
+ htsjdk | 31 | {bio-dev} |
+ dcm2niix | 23 | {imaging} |
+ gdcm | 23 | {covid-19,imaging} |
+ pixelmed | 18 | {imaging} |
minc-tools | 17 | {imaging} |
- openslide | 17 | {imaging} |
- plastimatch | 16 | {imaging} |
- gnumed-server | 15 | {covid-19,practice} |
- king | 15 | {typesetting,imaging} |
- ngs-sdk | 14 | {bio-dev} |
+ invesalius | 16 | {imaging} |
+ gnumed-server | 15 | {practice,covid-19} |
+ king | 15 | {imaging,typesetting} |
+ openslide | 15 | {imaging} |
+ plastimatch | 15 | {imaging} |
vtk-dicom | 14 | {imaging} |
- biosig4c++ | 13 | {imaging,physics} |
- gdcm | 13 | {imaging-dev} |
insighttoolkit4 | 13 | {imaging-dev} |
+ ngs-sdk | 13 | {bio-dev} |
adun.app | 12 | {bio} |
+ biosig4c++ | 12 | {imaging,physics} |
+ gdcm | 12 | {imaging-dev} |
biojava-live | 10 | {bio-dev} |
jebl2 | 10 | {bio-dev} |
obitools | 10 | {bio} |
+ librg-utils-perl | 9 | {bio} |
+ ngs-sdk | 9 | {bio-dev} |
orthanc-webviewer | 9 | {imaging} |
ea-utils | 8 | {bio} |
- librg-utils-perl | 8 | {bio} |
- ngs-sdk | 8 | {bio-dev} |
- orthanc-dicomweb | 8 | {covid-19,imaging} |
- tree-puzzle | 8 | {cloud,bio,bio-phylogeny} |
+ orthanc-dicomweb | 8 | {imaging,covid-19} |
+ stacks | 8 | {bio} |
+ tree-puzzle | 8 | {bio-phylogeny,cloud,bio} |
cgview | 7 | {bio} |
- fastlink | 7 | {cloud,bio} |
- gasic | 7 | {bio,cloud} |
- melting | 7 | {bio,cloud} |
+ fastlink | 7 | {bio,cloud} |
+ gasic | 7 | {cloud,bio} |
+ melting | 7 | {cloud,bio} |
orthanc-mysql | 7 | {imaging} |
alter-sequence-alignment | 6 | {bio} |
- arden | 6 | {bio,cloud} |
+ arden | 6 | {cloud,bio} |
indelible | 6 | {bio} |
libminc | 6 | {imaging-dev} |
libsbml | 6 | {bio-dev} |
maqview | 6 | {bio} |
mipe | 6 | {bio,cloud} |
+ ncbi-seg | 6 | {bio} |
+ norsp | 6 | {bio} |
nutsqlite | 6 | {tools} |
orthanc-postgresql | 6 | {imaging} |
piler | 6 | {bio} |
- salmon | 6 | {bio} |
- stacks | 6 | {bio} |
+ salmon | 6 | {bio,covid-19} |
staden | 6 | {bio} |
- ampliconnoise | 5 | {cloud,bio} |
+ ampliconnoise | 5 | {bio,cloud} |
anfo | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-cli | 5 | {cloud} |
bio-rainbow | 5 | {bio} |
- bio-tradis | 5 | {bio,bio-dev} |
+ bio-tradis | 5 | {bio-dev,bio} |
bppsuite | 5 | {bio} |
brig | 5 | {bio} |
cluster3 | 5 | {bio} |
dazzdb | 5 | {bio} |
edtsurf | 5 | {bio} |
- embassy-domainatrix | 5 | {cloud,bio} |
- embassy-domalign | 5 | {bio,cloud} |
- fitgcp | 5 | {cloud,bio} |
+ embassy-domainatrix | 5 | {bio,cloud} |
+ embassy-domalign | 5 | {cloud,bio} |
freecontact | 5 | {bio,cloud} |
jaligner | 5 | {bio} |
- jellyfish1 | 5 | {bio} |
libgff | 5 | {bio-dev} |
- ncbi-seg | 5 | {bio} |
- norsp | 5 | {bio} |
+ predictprotein | 5 | {bio} |
pymia | 5 | {imaging-dev} |
seer | 5 | {bio} |
sibsim4 | 5 | {cloud,bio} |
- sigma-align | 5 | {bio-phylogeny,cloud,bio} |
+ sigma-align | 5 | {bio,bio-phylogeny,cloud} |
transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
- abacas | 4 | {bio,covid-19} |
+ abacas | 4 | {covid-19,bio} |
biomaj3-daemon | 4 | {bio} |
bitseq | 4 | {bio} |
clonalorigin | 4 | {bio} |
@@ -90,23 +89,24 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000
gatb-core | 4 | {bio} |
harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
jmodeltest | 4 | {bio-phylogeny,bio} |
king-probe | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libncl | 4 | {bio} |
libpal-java | 4 | {bio-dev} |
- mapsembler2 | 4 | {bio,cloud} |
- mhap | 4 | {bio-ngs,bio} |
+ mapsembler2 | 4 | {cloud,bio} |
+ mhap | 4 | {bio,bio-ngs} |
microbegps | 4 | {bio} |
mrs | 4 | {bio} |
neobio | 4 | {cloud,bio} |
paml | 4 | {bio} |
- paraclu | 4 | {bio,cloud} |
+ paraclu | 4 | {cloud,bio} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
phyutility | 4 | {bio,cloud} |
poretools | 4 | {bio} |
- predictprotein | 4 | {bio} |
+ proalign | 4 | {bio-phylogeny,bio} |
probabel | 4 | {bio,cloud} |
pscan-tfbs | 4 | {bio} |
psychopy | 4 | {psychology} |
@@ -129,14 +129,14 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000
beads | 3 | {bio} |
beast2-mcmc | 3 | {bio} |
canu | 3 | {bio} |
- clonalframeml | 3 | {covid-19,bio} |
- cufflinks | 3 | {bio,cloud} |
+ clonalframeml | 3 | {bio,covid-19} |
+ cufflinks | 3 | {cloud,bio} |
dascrubber | 3 | {bio} |
dicompyler | 3 | {oncology} |
dindel | 3 | {bio} |
estscan | 3 | {bio} |
fastml | 3 | {bio} |
- freebayes | 3 | {bio} |
+ freebayes | 3 | {covid-19,bio} |
fsm-lite | 3 | {bio} |
kma | 3 | {bio} |
lagan | 3 | {bio} |
@@ -162,10 +162,9 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000
atropos | 2 | {bio} |
bandage | 2 | {bio} |
biosig4c++ | 2 | {imaging-dev,physics} |
- biosig4c++ | 2 | {physics,imaging-dev} |
blasr | 2 | {bio,bio-ngs} |
- centrifuge | 2 | {bio} |
- delly | 2 | {covid-19,bio} |
+ centrifuge | 2 | {covid-19,bio} |
+ delly | 2 | {bio,covid-19} |
dwgsim | 2 | {bio} |
elph | 2 | {bio} |
getdata | 2 | {bio} |
@@ -180,15 +179,13 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000
maffilter | 2 | {bio} |
mencal | 2 | {tools} |
metaphlan2 | 2 | {bio} |
- mlv-smile | 2 | {bio,cloud} |
+ mlv-smile | 2 | {cloud,bio} |
mptp | 2 | {bio} |
nanook | 2 | {bio} |
openslide | 2 | {imaging-dev} |
patman | 2 | {bio} |
phipack | 2 | {bio} |
pilon | 2 | {bio} |
- proalign | 2 | {bio,bio-phylogeny} |
- python-scitrack | 2 | {covid-19} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
relion | 2 | {bio} |
@@ -199,17 +196,17 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000
seqsero | 2 | {bio} |
snap-aligner | 2 | {bio} |
spaced | 2 | {bio} |
+ stringtie | 2 | {bio,covid-19} |
suitename | 2 | {bio} |
surankco | 2 | {bio} |
tnseq-transit | 2 | {covid-19,bio} |
tracetuner | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
- vsearch | 2 | {bio} |
+ vsearch | 2 | {covid-19,bio} |
yaha | 2 | {bio} |
- biobambam2 | 1 | {bio,covid-19,bio-dev} |
+ biobambam2 | 1 | {bio-dev,covid-19,bio} |
blimps | 1 | {bio} |
- ctn | 1 | {imaging-dev} |
- embassy-phylip | 1 | {bio,cloud} |
+ embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
@@ -222,37 +219,38 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000
multiqc | 1 | {covid-19,bio} |
ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {practice,tools,data} |
+ oscar | 1 | {data,practice,tools} |
pal2nal | 1 | {bio} |
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
plasmidseeker | 1 | {bio} |
+ python-scitrack | 1 | {covid-19} |
rampler | 1 | {bio} |
relion | 1 | {bio} |
- samblaster | 1 | {covid-19,bio} |
+ samblaster | 1 | {bio,covid-19} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
- stringtie | 1 | {covid-19,bio} |
sweed | 1 | {bio} |
trace2dbest | 1 | {bio} |
tree-puzzle | 1 | {bio,bio-phylogeny,cloud} |
tvc | 1 | {bio} |
- varscan | 1 | {covid-19,bio} |
+ varscan | 1 | {bio,covid-19} |
volpack | 1 | {imaging-dev} |
- acedb | 0 | {bio,cloud} |
- augur | 0 | {bio,covid-19} |
+ acedb | 0 | {cloud,bio} |
+ augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
+ ctn | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -267,7 +265,7 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
@@ -288,20 +286,20 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
- pycoqc | 0 | {covid-19,bio} |
- python-py2bit | 0 | {bio-dev,bio} |
- relion | 0 | {bio} |
+ pycoqc | 0 | {bio,covid-19} |
+ python-py2bit | 0 | {bio,bio-dev} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
- thesias | 0 | {covid-19,bio} |
+ thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
- bustools | -1 | {bio} |
-(330 rows)
+ bustools | -1 | {covid-19,bio} |
+(328 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/51eba0ce3791f54fdec24e7fc665c24482854299
--
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