[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.2.3

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / bcbio


Commits:
40344e2b by Steffen Moeller at 2020-04-30T23:00:11+02:00
New upstream version 1.2.3
- - - - -


30 changed files:

- + .github/ISSUE_TEMPLATE/bug_report.md
- .gitignore
- + .readthedocs.yml
- .travis.yml
- − Dockerfile
- HISTORY.md
- + README.md
- − README.rst
- − TODO.md
- bcbio/bam/__init__.py
- bcbio/bam/cram.py
- bcbio/broad/__init__.py
- bcbio/chipseq/atac.py
- bcbio/chipseq/peaks.py
- bcbio/heterogeneity/loh.py
- bcbio/install.py
- bcbio/ngsalign/alignprep.py
- bcbio/ngsalign/bowtie2.py
- bcbio/ngsalign/mosaik.py
- bcbio/ngsalign/postalign.py
- bcbio/pipeline/main.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/qc/multiqc.py
- bcbio/qc/qualimap.py
- bcbio/rnaseq/umi.py
- bcbio/structural/purecn.py
- bcbio/upload/__init__.py
- bcbio/utils.py
- bcbio/variation/gatkjoint.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/40344e2bc448bdea32d5b4c15b5fc6c2c60ba4a0

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