Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
8f7d3b8c by Andreas Tille at 2020-05-20T13:45:36+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,41 +1,41 @@
-Last-Update: Wed, 20 May 2020 01:42:03 +0000
+Last-Update: Wed, 20 May 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 190 | {imaging,covid-19} |
- orthanc | 99 | {imaging,covid-19,practice} |
- gdcm | 54 | {imaging-dev} |
- orthanc-wsi | 48 | {oncology,practice,laboratory,his,imaging,covid-19} |
+ dcmtk | 191 | {covid-19,imaging} |
+ orthanc | 100 | {practice,imaging,covid-19} |
+ gdcm | 52 | {imaging-dev} |
+ orthanc-wsi | 48 | {imaging,oncology,his,practice,covid-19,laboratory} |
+ dicom3tools | 31 | {imaging} |
htsjdk | 31 | {bio-dev} |
dicomscope | 30 | {imaging} |
- dicom3tools | 29 | {imaging} |
- dcm2niix | 22 | {imaging} |
- gdcm | 18 | {covid-19,imaging} |
- gnumed-server | 17 | {practice,covid-19} |
- minc-tools | 17 | {imaging} |
+ dcm2niix | 23 | {imaging} |
+ gdcm | 19 | {imaging,covid-19} |
+ minc-tools | 19 | {imaging} |
+ pixelmed | 18 | {imaging} |
+ gnumed-server | 17 | {covid-19,practice} |
insighttoolkit4 | 16 | {imaging-dev} |
- pixelmed | 16 | {imaging} |
invesalius | 15 | {imaging} |
- plastimatch | 14 | {imaging} |
- adun.app | 13 | {bio} |
+ plastimatch | 15 | {imaging} |
+ adun.app | 14 | {bio} |
+ openslide | 14 | {imaging} |
+ vtk-dicom | 14 | {imaging} |
+ king | 13 | {typesetting,imaging} |
ngs-sdk | 13 | {bio-dev} |
- openslide | 13 | {imaging} |
stacks | 13 | {bio} |
- vtk-dicom | 13 | {imaging} |
- king | 12 | {typesetting,imaging} |
- biosig4c++ | 10 | {imaging,physics} |
+ biosig4c++ | 11 | {physics,imaging} |
gdcm | 10 | {imaging-dev} |
librg-utils-perl | 10 | {bio} |
+ ngs-sdk | 10 | {bio-dev} |
biojava-live | 9 | {bio-dev} |
jebl2 | 9 | {bio-dev} |
- ngs-sdk | 9 | {bio-dev} |
obitools | 9 | {bio} |
ea-utils | 8 | {bio} |
fastlink | 8 | {bio,cloud} |
paml | 8 | {bio} |
alter-sequence-alignment | 7 | {bio} |
- ampliconnoise | 7 | {cloud,bio} |
- arden | 7 | {bio,cloud} |
+ ampliconnoise | 7 | {bio,cloud} |
+ arden | 7 | {cloud,bio} |
indelible | 7 | {bio} |
maqview | 7 | {bio} |
melting | 7 | {bio,cloud} |
@@ -45,51 +45,51 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
orthanc-webviewer | 7 | {imaging} |
piler | 7 | {bio} |
staden | 7 | {bio} |
- abacas | 6 | {bio,covid-19} |
+ abacas | 6 | {covid-19,bio} |
anfo | 6 | {cloud,bio} |
biomaj3-cli | 6 | {cloud} |
bio-rainbow | 6 | {bio} |
- bio-tradis | 6 | {bio-dev,bio} |
+ bio-tradis | 6 | {bio,bio-dev} |
bppsuite | 6 | {bio} |
cgview | 6 | {bio} |
dazzdb | 6 | {bio} |
edtsurf | 6 | {bio} |
embassy-domainatrix | 6 | {cloud,bio} |
- embassy-domalign | 6 | {bio,cloud} |
+ embassy-domalign | 6 | {cloud,bio} |
libminc | 6 | {imaging-dev} |
- nutsqlite | 6 | {tools} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
orthanc-mysql | 6 | {imaging} |
psychopy | 6 | {psychology} |
pymia | 6 | {imaging-dev} |
radiant | 6 | {bio} |
saint | 6 | {bio} |
- salmon | 6 | {bio,covid-19} |
+ salmon | 6 | {covid-19,bio} |
seer | 6 | {bio} |
- sibsim4 | 6 | {cloud,bio} |
- sigma-align | 6 | {cloud,bio,bio-phylogeny} |
+ sibsim4 | 6 | {bio,cloud} |
+ sigma-align | 6 | {bio-phylogeny,bio,cloud} |
transrate-tools | 6 | {bio} |
transtermhp | 6 | {bio} |
bart-view | 5 | {imaging} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
bitseq | 5 | {bio} |
cluster3 | 5 | {bio} |
- daligner | 5 | {bio-ngs,bio} |
+ daligner | 5 | {bio,bio-ngs} |
ecopcr | 5 | {bio} |
- embassy-domsearch | 5 | {bio,cloud} |
- gasic | 5 | {cloud,bio} |
+ embassy-domsearch | 5 | {cloud,bio} |
+ gasic | 5 | {bio,cloud} |
gatb-core | 5 | {bio} |
ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
king-probe | 5 | {bio} |
lagan | 5 | {bio} |
- mapsembler2 | 5 | {cloud,bio} |
+ mapsembler2 | 5 | {bio,cloud} |
mrs | 5 | {bio} |
neobio | 5 | {cloud,bio} |
+ nutsqlite | 5 | {tools} |
orthanc-postgresql | 5 | {imaging} |
- paraclu | 5 | {cloud,bio} |
+ paraclu | 5 | {bio,cloud} |
phast | 5 | {bio} |
- phyutility | 5 | {cloud,bio} |
+ phyutility | 5 | {bio,cloud} |
predictprotein | 5 | {bio} |
probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
@@ -97,8 +97,8 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
seqtools | 5 | {bio} |
sickle | 5 | {bio} |
squizz | 5 | {cloud,bio} |
- treeview | 5 | {bio,bio-phylogeny} |
- zalign | 5 | {bio,cloud} |
+ treeview | 5 | {bio-phylogeny,bio} |
+ zalign | 5 | {cloud,bio} |
assemblytics | 4 | {bio} |
baitfisher | 4 | {bio} |
bandage | 4 | {bio} |
@@ -117,7 +117,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
fsm-lite | 4 | {bio} |
harvest-tools | 4 | {bio} |
jaligner | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
libdivsufsort | 4 | {bio-dev} |
libgff | 4 | {bio-dev} |
libncl | 4 | {bio} |
@@ -129,7 +129,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
phybin | 4 | {bio} |
placnet | 4 | {bio} |
poretools | 4 | {bio} |
- prime-phylo | 4 | {cloud,bio} |
+ prime-phylo | 4 | {bio,cloud} |
proalign | 4 | {bio,bio-phylogeny} |
rambo-k | 4 | {bio} |
rdp-alignment | 4 | {bio} |
@@ -144,12 +144,12 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
sprai | 4 | {bio} |
- spread-phy | 4 | {bio-phylogeny,bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
beast2-mcmc | 3 | {bio} |
- blasr | 3 | {bio,bio-ngs} |
+ blasr | 3 | {bio-ngs,bio} |
canu | 3 | {bio} |
- centrifuge | 3 | {covid-19,bio} |
- cufflinks | 3 | {cloud,bio} |
+ centrifuge | 3 | {bio,covid-19} |
+ cufflinks | 3 | {bio,cloud} |
delly | 3 | {covid-19,bio} |
dwgsim | 3 | {bio} |
elph | 3 | {bio} |
@@ -162,7 +162,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
maffilter | 3 | {bio} |
mauve-aligner | 3 | {bio} |
mhap | 3 | {bio,bio-ngs} |
- mlv-smile | 3 | {bio,cloud} |
+ mlv-smile | 3 | {cloud,bio} |
mptp | 3 | {bio} |
patman | 3 | {bio} |
phipack | 3 | {bio} |
@@ -174,7 +174,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
rdp-classifier | 3 | {bio} |
rtax | 3 | {cloud,bio} |
scrm | 3 | {bio} |
- seqmagick | 3 | {bio,covid-19} |
+ seqmagick | 3 | {covid-19,bio} |
seqsero | 3 | {bio} |
spaced | 3 | {bio} |
srf | 3 | {bio-dev} |
@@ -198,7 +198,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
metaphlan2 | 2 | {bio} |
nanook | 2 | {bio} |
openslide | 2 | {imaging-dev} |
- oscar | 2 | {practice,tools,data} |
+ oscar | 2 | {tools,data,practice} |
pal2nal | 2 | {bio} |
pbdagcon | 2 | {bio} |
pilon | 2 | {bio} |
@@ -211,42 +211,42 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
sweed | 2 | {bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
- acedb | 1 | {cloud,bio} |
+ acedb | 1 | {bio,cloud} |
biobambam2 | 1 | {bio,covid-19,bio-dev} |
blimps | 1 | {bio} |
+ busco | 1 | {bio,covid-19} |
embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
- libmaus2 | 1 | {bio-dev,covid-19} |
+ libmaus2 | 1 | {covid-19,bio-dev} |
libmialm | 1 | {imaging-dev} |
libsmithwaterman | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- python-py2bit | 1 | {bio,bio-dev} |
+ python-py2bit | 1 | {bio-dev,bio} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
- spaln | 1 | {covid-19,bio} |
- varscan | 1 | {covid-19,bio} |
+ spaln | 1 | {bio,covid-19} |
+ varscan | 1 | {bio,covid-19} |
volpack | 1 | {imaging-dev} |
- augur | 0 | {covid-19,bio} |
+ augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
- busco | 0 | {covid-19} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -261,7 +261,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
@@ -281,6 +281,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
ngs-sdk | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
+ parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
@@ -293,11 +294,10 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
solvate | 0 | {bio} |
- thesias | 0 | {bio,covid-19} |
+ thesias | 0 | {covid-19,bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
- bustools | -1 | {bio,covid-19} |
- parallel-fastq-dump | -1 | {covid-19} |
+ bustools | -1 | {covid-19,bio} |
(326 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8f7d3b8cbf64e837b0310dcba8df57e379fe5d95
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8f7d3b8cbf64e837b0310dcba8df57e379fe5d95
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