[med-svn] [Git][med-team/tnseq-transit][upstream] New upstream version 3.1.0

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / tnseq-transit


Commits:
4038db1d by Steffen Moeller at 2020-05-23T18:43:55+02:00
New upstream version 3.1.0
- - - - -


30 changed files:

- CHANGELOG.md
- src/pytpp/tpp_tools.py
- src/pytransit/__init__.py
- src/pytransit/analysis/__init__.py
- src/pytransit/analysis/anova.py
- src/pytransit/analysis/base.py
- src/pytransit/analysis/binomial.py
- + src/pytransit/analysis/corrplot.py
- src/pytransit/analysis/example.py
- src/pytransit/analysis/gi.py
- src/pytransit/analysis/griffin.py
- src/pytransit/analysis/gumbel.py
- + src/pytransit/analysis/heatmap.py
- src/pytransit/analysis/hmm.py
- src/pytransit/analysis/norm.py
- src/pytransit/analysis/normalize.py
- src/pytransit/analysis/pathway_enrichment.py
- src/pytransit/analysis/rankproduct.py
- src/pytransit/analysis/resampling.py
- src/pytransit/analysis/tn5gaps.py
- src/pytransit/analysis/tnseq_stats.py
- src/pytransit/analysis/utest.py
- src/pytransit/analysis/zinb.py
- src/pytransit/convert/gff_to_prot_table.py
- + src/pytransit/data/COG_roles.dat
- + src/pytransit/data/GO_term_names.dat
- + src/pytransit/data/H37Rv_COG_roles.dat
- + src/pytransit/data/H37Rv_GO_terms.txt
- + src/pytransit/data/H37Rv_sanger_roles.dat
- + src/pytransit/data/sanger_roles.dat


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/tnseq-transit/-/commit/4038db1d8255601a0b38d83916f235b96b01c915

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