[med-svn] [Git][med-team/picard-tools][master] 6 commits: remove libguava-java-doc dependency #961700

[Olivier Sallou]

Olivier Sallou pushed to branch master at Debian Med / picard-tools


Commits:
531b908b by Olivier Sallou at 2020-05-29T07:13:20+00:00
remove libguava-java-doc dependency  #961700

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bf240e7a by Olivier Sallou at 2020-05-29T07:29:39+00:00
remove test needing network for hostname resolution for debian CI/reproducibility

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0d53af38 by Olivier Sallou at 2020-05-29T07:31:15+00:00
remove dep libguava-java-doc

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f61f858d by Olivier Sallou at 2020-05-29T08:23:50+00:00
New upstream version 2.22.8+dfsg
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b0542535 by Olivier Sallou at 2020-05-29T08:24:32+00:00
Update upstream source from tag 'upstream/2.22.8+dfsg'

Update to upstream version '2.22.8+dfsg'
with Debian dir f38ce27cc3c7fd2792176ac656bfde4a758e3afe
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528b5440 by Olivier Sallou at 2020-05-29T08:28:05+00:00
nw upstream release 2.22.8

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30 changed files:

- − .pullapprove.yml
- .travis.yml
- Dockerfile
- README.md
- build.gradle
- build_push_docker.sh
- debian/changelog
- debian/control
- + debian/patches/60-tests-exclude-network.patch
- debian/patches/series
- + docs/fingerprinting/main.pdf
- + docs/fingerprinting/main.tex
- gradle/wrapper/gradle-wrapper.properties
- gradlew
- settings.gradle
- src/main/java/picard/analysis/AbstractWgsMetricsCollector.java
- src/main/java/picard/analysis/AdapterUtility.java
- src/main/java/picard/analysis/AlignmentSummaryMetrics.java
- src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java
- src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
- src/main/java/picard/analysis/CollectBaseDistributionByCycle.java
- src/main/java/picard/analysis/CollectGcBiasMetrics.java
- src/main/java/picard/analysis/CollectInsertSizeMetrics.java
- src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java
- src/main/java/picard/analysis/CollectMultipleMetrics.java
- src/main/java/picard/analysis/CollectRawWgsMetrics.java
- src/main/java/picard/analysis/CollectRnaSeqMetrics.java
- src/main/java/picard/analysis/CollectRrbsMetrics.java
- src/main/java/picard/analysis/CollectWgsMetrics.java
- src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/bef95506d7ecd02a8e2e319510ecccab09aa3294...528b54402a852ebb67f4670813403e1de80840f2

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View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/bef95506d7ecd02a8e2e319510ecccab09aa3294...528b54402a852ebb67f4670813403e1de80840f2
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