[med-svn] [Git][med-team/paleomix][master] 8 commits: routine-update: New upstream version

[Étienne Mollier]

Étienne Mollier pushed to branch master at Debian Med / paleomix


Commits:
cf42e3e0 by Étienne Mollier at 2020-11-02T17:22:24+01:00
routine-update: New upstream version

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8c4563a8 by Étienne Mollier at 2020-11-02T17:22:25+01:00
New upstream version 1.3.2
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9e78180d by Étienne Mollier at 2020-11-02T17:22:28+01:00
Update upstream source from tag 'upstream/1.3.2'

Update to upstream version '1.3.2'
with Debian dir c652a722f76e41fd7bc86c592ea24eeb39aa5257
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661334c8 by Étienne Mollier at 2020-11-02T17:34:13+01:00
remove python3_in_shebang.patch

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7b66c327 by Étienne Mollier at 2020-11-02T17:51:38+01:00
refresh xfail_command_tests.patch

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2bf8aecd by Étienne Mollier at 2020-11-02T18:27:11+01:00
mark xfail_command_tests.patch no forward needed

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476de113 by Étienne Mollier at 2020-11-02T18:33:53+01:00
compressed-duplicate now unused-override

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e5e7aba8 by Étienne Mollier at 2020-11-02T18:44:46+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- .gitignore
- CHANGES.md
- debian/changelog
- debian/lintian-overrides
- − debian/patches/python3_in_shebang.patch
- debian/patches/series
- debian/patches/xfail_command_tests.patch
- docs/Makefile
- docs/bam_pipeline/configuration.rst
- docs/conf.py
- docs/installation.rst
- docs/phylo_pipeline/usage.rst
- docs/release.rst
- misc/skeleton.py
- misc/synthesize_reads.py
- paleomix/__init__.py
- paleomix/atomiccmd/__init__.py
- paleomix/atomiccmd/builder.py
- paleomix/atomiccmd/command.py
- paleomix/atomiccmd/pprint.py
- paleomix/atomiccmd/sets.py
- paleomix/common/__init__.py
- paleomix/common/argparse.py
- paleomix/common/bamfiles.py
- paleomix/common/bedtools.py
- paleomix/common/fileutils.py
- paleomix/common/formats/__init__.py
- paleomix/common/formats/_common.py
- paleomix/common/formats/_graph.py
- paleomix/common/formats/fasta.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/paleomix/-/compare/ce597928ec336f28c5989f3f645392eac4240569...e5e7aba8bc647ac6d5029ccde8a2cabf23c3d790

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View it on GitLab: https://salsa.debian.org/med-team/paleomix/-/compare/ce597928ec336f28c5989f3f645392eac4240569...e5e7aba8bc647ac6d5029ccde8a2cabf23c3d790
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