[med-svn] [Git][med-team/paleomix][upstream] New upstream version 1.3.2

[Étienne Mollier]

Étienne Mollier pushed to branch upstream at Debian Med / paleomix


Commits:
8c4563a8 by Étienne Mollier at 2020-11-02T17:22:25+01:00
New upstream version 1.3.2
- - - - -


30 changed files:

- .gitignore
- CHANGES.md
- docs/Makefile
- docs/bam_pipeline/configuration.rst
- docs/conf.py
- docs/installation.rst
- docs/phylo_pipeline/usage.rst
- docs/release.rst
- misc/skeleton.py
- misc/synthesize_reads.py
- paleomix/__init__.py
- paleomix/atomiccmd/__init__.py
- paleomix/atomiccmd/builder.py
- paleomix/atomiccmd/command.py
- paleomix/atomiccmd/pprint.py
- paleomix/atomiccmd/sets.py
- paleomix/common/__init__.py
- paleomix/common/argparse.py
- paleomix/common/bamfiles.py
- paleomix/common/bedtools.py
- paleomix/common/fileutils.py
- paleomix/common/formats/__init__.py
- paleomix/common/formats/_common.py
- paleomix/common/formats/_graph.py
- paleomix/common/formats/fasta.py
- paleomix/common/formats/fastq.py
- paleomix/common/formats/msa.py
- paleomix/common/formats/newick.py
- paleomix/common/formats/phylip.py
- paleomix/common/logging.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/paleomix/-/commit/8c4563a807ff7e0e12d20d9c616ae751284d71bf

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